miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26923 5' -54.7 NC_005809.1 + 5358 1.1 0.000671
Target:  5'- uGGCGACAGCCAACAUGCUCGACAGGUg -3'
miRNA:   3'- -CCGCUGUCGGUUGUACGAGCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 23554 0.76 0.194459
Target:  5'- uGGCcuCGGCCGACAUcGC-CGGCAGGUg -3'
miRNA:   3'- -CCGcuGUCGGUUGUA-CGaGCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 27305 0.75 0.2111
Target:  5'- gGGCGACAGCgGGCAacuguuUGUgCGGCAGGc -3'
miRNA:   3'- -CCGCUGUCGgUUGU------ACGaGCUGUCCa -5'
26923 5' -54.7 NC_005809.1 + 10958 0.75 0.222865
Target:  5'- cGGCGACAGCCGgggACAcugggccaccUGUUCGGcCAGGc -3'
miRNA:   3'- -CCGCUGUCGGU---UGU----------ACGAGCU-GUCCa -5'
26923 5' -54.7 NC_005809.1 + 14116 0.74 0.235182
Target:  5'- cGGCGACGGCCucauguACGUGCcggaaaUCGACGGc- -3'
miRNA:   3'- -CCGCUGUCGGu-----UGUACG------AGCUGUCca -5'
26923 5' -54.7 NC_005809.1 + 37784 0.72 0.313331
Target:  5'- aGCGcCAGCCGGCGUGCUgGgcGCAGuGUg -3'
miRNA:   3'- cCGCuGUCGGUUGUACGAgC--UGUC-CA- -5'
26923 5' -54.7 NC_005809.1 + 1708 0.72 0.337802
Target:  5'- cGcCGugGGCCGGCGUGC-CGGCgAGGg -3'
miRNA:   3'- cC-GCugUCGGUUGUACGaGCUG-UCCa -5'
26923 5' -54.7 NC_005809.1 + 37000 0.71 0.37796
Target:  5'- cGGUGGCGGCCAGCGUugGCgccgucgauaccgUGGCGGGc -3'
miRNA:   3'- -CCGCUGUCGGUUGUA--CGa------------GCUGUCCa -5'
26923 5' -54.7 NC_005809.1 + 15163 0.7 0.400149
Target:  5'- gGGCGACGGCUGAUGUuGCUCcuGACAuGGc -3'
miRNA:   3'- -CCGCUGUCGGUUGUA-CGAG--CUGU-CCa -5'
26923 5' -54.7 NC_005809.1 + 1315 0.7 0.400149
Target:  5'- gGGCGACGGCCAcCAgGC-CGACAa-- -3'
miRNA:   3'- -CCGCUGUCGGUuGUaCGaGCUGUcca -5'
26923 5' -54.7 NC_005809.1 + 28057 0.7 0.429026
Target:  5'- cGGCGACGGUC----UGCUCGaacagcggGCAGGUg -3'
miRNA:   3'- -CCGCUGUCGGuuguACGAGC--------UGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 14551 0.7 0.438921
Target:  5'- cGGCGAC-GCCGACAUGaUCGGCu--- -3'
miRNA:   3'- -CCGCUGuCGGUUGUACgAGCUGucca -5'
26923 5' -54.7 NC_005809.1 + 16301 0.7 0.438921
Target:  5'- cGCGAUgcgcgAGCCGACcagGC-CGGCGGGUg -3'
miRNA:   3'- cCGCUG-----UCGGUUGua-CGaGCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 730 0.7 0.448945
Target:  5'- gGGCGGCuuuGCCGACAacGC-CGGcCAGGUc -3'
miRNA:   3'- -CCGCUGu--CGGUUGUa-CGaGCU-GUCCA- -5'
26923 5' -54.7 NC_005809.1 + 21302 0.69 0.459094
Target:  5'- gGGcCGACAcuuacGCCGACAUGCUgGGCAu-- -3'
miRNA:   3'- -CC-GCUGU-----CGGUUGUACGAgCUGUcca -5'
26923 5' -54.7 NC_005809.1 + 8035 0.69 0.469365
Target:  5'- cGGUGACAGCCucGACGcucaaccgcUGCUCGACc--- -3'
miRNA:   3'- -CCGCUGUCGG--UUGU---------ACGAGCUGucca -5'
26923 5' -54.7 NC_005809.1 + 4381 0.69 0.479751
Target:  5'- aGGCGACGGCCGACuUG-UCGGCc--- -3'
miRNA:   3'- -CCGCUGUCGGUUGuACgAGCUGucca -5'
26923 5' -54.7 NC_005809.1 + 29041 0.69 0.490249
Target:  5'- --aGGCGGCCGACA-GUUCGGCGcGGa -3'
miRNA:   3'- ccgCUGUCGGUUGUaCGAGCUGU-CCa -5'
26923 5' -54.7 NC_005809.1 + 24302 0.68 0.533236
Target:  5'- cGCuGACGGCCGGCAaguuCUCGgcGCAGGUc -3'
miRNA:   3'- cCG-CUGUCGGUUGUac--GAGC--UGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 26518 0.68 0.533236
Target:  5'- cGCGGCGGCC-ACGUGCgCGAacuGGc -3'
miRNA:   3'- cCGCUGUCGGuUGUACGaGCUgu-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.