Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 41534 | 0.68 | 0.542001 |
Target: 5'- cGGCGACAugcugccGCCGGCcguggccuuccagGUGUUCGACGcugcGGUg -3' miRNA: 3'- -CCGCUGU-------CGGUUG-------------UACGAGCUGU----CCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 24456 | 0.68 | 0.5431 |
Target: 5'- cGGCGACAuugacGCCGACGaccugcUGCUUGGCcugcgccAGGa -3' miRNA: 3'- -CCGCUGU-----CGGUUGU------ACGAGCUG-------UCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 21806 | 0.68 | 0.5442 |
Target: 5'- uGGCgGACA-CCGGCAguUGCagCGGCGGGUu -3' miRNA: 3'- -CCG-CUGUcGGUUGU--ACGa-GCUGUCCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 31476 | 0.68 | 0.5442 |
Target: 5'- uGGCcGCAGCCGACAaggUGCUCGcGCGc-- -3' miRNA: 3'- -CCGcUGUCGGUUGU---ACGAGC-UGUcca -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 21249 | 0.68 | 0.555235 |
Target: 5'- cGCGGUGGCCGGCAucaagcccgaagUGCUCGACAaGUu -3' miRNA: 3'- cCGCUGUCGGUUGU------------ACGAGCUGUcCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 13684 | 0.68 | 0.566336 |
Target: 5'- cGGCGACGGCCAGCAacuacGC-CaGCAGcGa -3' miRNA: 3'- -CCGCUGUCGGUUGUa----CGaGcUGUC-Ca -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 13253 | 0.67 | 0.577493 |
Target: 5'- cGGCGACcGCCAccGCcuugaaGUGCUgGGCAaGGg -3' miRNA: 3'- -CCGCUGuCGGU--UG------UACGAgCUGU-CCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 13030 | 0.67 | 0.588697 |
Target: 5'- uGGCGACGGCCucgucaucGCGUuGCUUGAguGcGg -3' miRNA: 3'- -CCGCUGUCGGu-------UGUA-CGAGCUguC-Ca -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 26031 | 0.67 | 0.599939 |
Target: 5'- cGGCGAUGGCaucaaAGCccGCgCGGCGGGc -3' miRNA: 3'- -CCGCUGUCGg----UUGuaCGaGCUGUCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 4880 | 0.67 | 0.599939 |
Target: 5'- cGGCGA--GCCAcgcaauCAUGCguccuucgauguUCGACAGGUc -3' miRNA: 3'- -CCGCUguCGGUu-----GUACG------------AGCUGUCCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 32915 | 0.67 | 0.621372 |
Target: 5'- cGGCcACGGCCuGCAcggcugcUGUUCGGcCAGGg -3' miRNA: 3'- -CCGcUGUCGGuUGU-------ACGAGCU-GUCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 30985 | 0.67 | 0.622501 |
Target: 5'- cGGCGGcCAGCCGGCGgcccUGggCGGCAuGGc -3' miRNA: 3'- -CCGCU-GUCGGUUGU----ACgaGCUGU-CCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 10916 | 0.67 | 0.622501 |
Target: 5'- uGGCGACcuGCCcGCcgGUUUG-CAGGg -3' miRNA: 3'- -CCGCUGu-CGGuUGuaCGAGCuGUCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 35962 | 0.66 | 0.633801 |
Target: 5'- uGGCGGCGGacuaCGcCAUGCUCuACGuGGUg -3' miRNA: 3'- -CCGCUGUCg---GUuGUACGAGcUGU-CCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 4513 | 0.66 | 0.656385 |
Target: 5'- gGGCGGC-GCCcgugaacguGGCGUGCUgGGCGGu- -3' miRNA: 3'- -CCGCUGuCGG---------UUGUACGAgCUGUCca -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 25744 | 0.66 | 0.656385 |
Target: 5'- cGGCGGCAGCaCGcuggGCGcgcUGCUgGGCGGcGg -3' miRNA: 3'- -CCGCUGUCG-GU----UGU---ACGAgCUGUC-Ca -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 8549 | 0.66 | 0.667647 |
Target: 5'- -uCGACAGCCGcgccgaugGCggGCagCGACAGGc -3' miRNA: 3'- ccGCUGUCGGU--------UGuaCGa-GCUGUCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 39649 | 0.66 | 0.667647 |
Target: 5'- cGGUGugGGCCGGCAUGggaaUgGGCAagacGGUu -3' miRNA: 3'- -CCGCugUCGGUUGUACg---AgCUGU----CCA- -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 9280 | 0.66 | 0.678874 |
Target: 5'- cGCGAUAGCCAGCGgugGC-CGuGCcGGa -3' miRNA: 3'- cCGCUGUCGGUUGUa--CGaGC-UGuCCa -5' |
|||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 23652 | 0.66 | 0.678874 |
Target: 5'- cGGCGGCGGgCAGCAacUGCaccaggcgacccUCGGuCGGGc -3' miRNA: 3'- -CCGCUGUCgGUUGU--ACG------------AGCU-GUCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home