Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 13253 | 0.67 | 0.577493 |
Target: 5'- cGGCGACcGCCAccGCcuugaaGUGCUgGGCAaGGg -3' miRNA: 3'- -CCGCUGuCGGU--UG------UACGAgCUGU-CCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 13684 | 0.68 | 0.566336 |
Target: 5'- cGGCGACGGCCAGCAacuacGC-CaGCAGcGa -3' miRNA: 3'- -CCGCUGUCGGUUGUa----CGaGcUGUC-Ca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 21249 | 0.68 | 0.555235 |
Target: 5'- cGCGGUGGCCGGCAucaagcccgaagUGCUCGACAaGUu -3' miRNA: 3'- cCGCUGUCGGUUGU------------ACGAGCUGUcCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 21806 | 0.68 | 0.5442 |
Target: 5'- uGGCgGACA-CCGGCAguUGCagCGGCGGGUu -3' miRNA: 3'- -CCG-CUGUcGGUUGU--ACGa-GCUGUCCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 31476 | 0.68 | 0.5442 |
Target: 5'- uGGCcGCAGCCGACAaggUGCUCGcGCGc-- -3' miRNA: 3'- -CCGcUGUCGGUUGU---ACGAGC-UGUcca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 24456 | 0.68 | 0.5431 |
Target: 5'- cGGCGACAuugacGCCGACGaccugcUGCUUGGCcugcgccAGGa -3' miRNA: 3'- -CCGCUGU-----CGGUUGU------ACGAGCUG-------UCCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 41534 | 0.68 | 0.542001 |
Target: 5'- cGGCGACAugcugccGCCGGCcguggccuuccagGUGUUCGACGcugcGGUg -3' miRNA: 3'- -CCGCUGU-------CGGUUG-------------UACGAGCUGU----CCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 26518 | 0.68 | 0.533236 |
Target: 5'- cGCGGCGGCC-ACGUGCgCGAacuGGc -3' miRNA: 3'- cCGCUGUCGGuUGUACGaGCUgu-CCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 24302 | 0.68 | 0.533236 |
Target: 5'- cGCuGACGGCCGGCAaguuCUCGgcGCAGGUc -3' miRNA: 3'- cCG-CUGUCGGUUGUac--GAGC--UGUCCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 29041 | 0.69 | 0.490249 |
Target: 5'- --aGGCGGCCGACA-GUUCGGCGcGGa -3' miRNA: 3'- ccgCUGUCGGUUGUaCGAGCUGU-CCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 4381 | 0.69 | 0.479751 |
Target: 5'- aGGCGACGGCCGACuUG-UCGGCc--- -3' miRNA: 3'- -CCGCUGUCGGUUGuACgAGCUGucca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 8035 | 0.69 | 0.469365 |
Target: 5'- cGGUGACAGCCucGACGcucaaccgcUGCUCGACc--- -3' miRNA: 3'- -CCGCUGUCGG--UUGU---------ACGAGCUGucca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 21302 | 0.69 | 0.459094 |
Target: 5'- gGGcCGACAcuuacGCCGACAUGCUgGGCAu-- -3' miRNA: 3'- -CC-GCUGU-----CGGUUGUACGAgCUGUcca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 730 | 0.7 | 0.448945 |
Target: 5'- gGGCGGCuuuGCCGACAacGC-CGGcCAGGUc -3' miRNA: 3'- -CCGCUGu--CGGUUGUa-CGaGCU-GUCCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 14551 | 0.7 | 0.438921 |
Target: 5'- cGGCGAC-GCCGACAUGaUCGGCu--- -3' miRNA: 3'- -CCGCUGuCGGUUGUACgAGCUGucca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 16301 | 0.7 | 0.438921 |
Target: 5'- cGCGAUgcgcgAGCCGACcagGC-CGGCGGGUg -3' miRNA: 3'- cCGCUG-----UCGGUUGua-CGaGCUGUCCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 28057 | 0.7 | 0.429026 |
Target: 5'- cGGCGACGGUC----UGCUCGaacagcggGCAGGUg -3' miRNA: 3'- -CCGCUGUCGGuuguACGAGC--------UGUCCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 1315 | 0.7 | 0.400149 |
Target: 5'- gGGCGACGGCCAcCAgGC-CGACAa-- -3' miRNA: 3'- -CCGCUGUCGGUuGUaCGaGCUGUcca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 15163 | 0.7 | 0.400149 |
Target: 5'- gGGCGACGGCUGAUGUuGCUCcuGACAuGGc -3' miRNA: 3'- -CCGCUGUCGGUUGUA-CGAG--CUGU-CCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 37000 | 0.71 | 0.37796 |
Target: 5'- cGGUGGCGGCCAGCGUugGCgccgucgauaccgUGGCGGGc -3' miRNA: 3'- -CCGCUGUCGGUUGUA--CGa------------GCUGUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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