miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26923 5' -54.7 NC_005809.1 + 14869 0.66 0.678874
Target:  5'- cGGCGGCgAGCCGcuGCcgGCgcgCGGCcuGUa -3'
miRNA:   3'- -CCGCUG-UCGGU--UGuaCGa--GCUGucCA- -5'
26923 5' -54.7 NC_005809.1 + 15163 0.7 0.400149
Target:  5'- gGGCGACGGCUGAUGUuGCUCcuGACAuGGc -3'
miRNA:   3'- -CCGCUGUCGGUUGUA-CGAG--CUGU-CCa -5'
26923 5' -54.7 NC_005809.1 + 16301 0.7 0.438921
Target:  5'- cGCGAUgcgcgAGCCGACcagGC-CGGCGGGUg -3'
miRNA:   3'- cCGCUG-----UCGGUUGua-CGaGCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 21249 0.68 0.555235
Target:  5'- cGCGGUGGCCGGCAucaagcccgaagUGCUCGACAaGUu -3'
miRNA:   3'- cCGCUGUCGGUUGU------------ACGAGCUGUcCA- -5'
26923 5' -54.7 NC_005809.1 + 21302 0.69 0.459094
Target:  5'- gGGcCGACAcuuacGCCGACAUGCUgGGCAu-- -3'
miRNA:   3'- -CC-GCUGU-----CGGUUGUACGAgCUGUcca -5'
26923 5' -54.7 NC_005809.1 + 21806 0.68 0.5442
Target:  5'- uGGCgGACA-CCGGCAguUGCagCGGCGGGUu -3'
miRNA:   3'- -CCG-CUGUcGGUUGU--ACGa-GCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 23554 0.76 0.194459
Target:  5'- uGGCcuCGGCCGACAUcGC-CGGCAGGUg -3'
miRNA:   3'- -CCGcuGUCGGUUGUA-CGaGCUGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 23652 0.66 0.678874
Target:  5'- cGGCGGCGGgCAGCAacUGCaccaggcgacccUCGGuCGGGc -3'
miRNA:   3'- -CCGCUGUCgGUUGU--ACG------------AGCU-GUCCa -5'
26923 5' -54.7 NC_005809.1 + 24302 0.68 0.533236
Target:  5'- cGCuGACGGCCGGCAaguuCUCGgcGCAGGUc -3'
miRNA:   3'- cCG-CUGUCGGUUGUac--GAGC--UGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 24456 0.68 0.5431
Target:  5'- cGGCGACAuugacGCCGACGaccugcUGCUUGGCcugcgccAGGa -3'
miRNA:   3'- -CCGCUGU-----CGGUUGU------ACGAGCUG-------UCCa -5'
26923 5' -54.7 NC_005809.1 + 24623 0.66 0.678874
Target:  5'- aGCGGCAcGUCGaaccacaugGCGUGC-CGGCGGGc -3'
miRNA:   3'- cCGCUGU-CGGU---------UGUACGaGCUGUCCa -5'
26923 5' -54.7 NC_005809.1 + 25744 0.66 0.656385
Target:  5'- cGGCGGCAGCaCGcuggGCGcgcUGCUgGGCGGcGg -3'
miRNA:   3'- -CCGCUGUCG-GU----UGU---ACGAgCUGUC-Ca -5'
26923 5' -54.7 NC_005809.1 + 26031 0.67 0.599939
Target:  5'- cGGCGAUGGCaucaaAGCccGCgCGGCGGGc -3'
miRNA:   3'- -CCGCUGUCGg----UUGuaCGaGCUGUCCa -5'
26923 5' -54.7 NC_005809.1 + 26518 0.68 0.533236
Target:  5'- cGCGGCGGCC-ACGUGCgCGAacuGGc -3'
miRNA:   3'- cCGCUGUCGGuUGUACGaGCUgu-CCa -5'
26923 5' -54.7 NC_005809.1 + 27305 0.75 0.2111
Target:  5'- gGGCGACAGCgGGCAacuguuUGUgCGGCAGGc -3'
miRNA:   3'- -CCGCUGUCGgUUGU------ACGaGCUGUCCa -5'
26923 5' -54.7 NC_005809.1 + 28057 0.7 0.429026
Target:  5'- cGGCGACGGUC----UGCUCGaacagcggGCAGGUg -3'
miRNA:   3'- -CCGCUGUCGGuuguACGAGC--------UGUCCA- -5'
26923 5' -54.7 NC_005809.1 + 29041 0.69 0.490249
Target:  5'- --aGGCGGCCGACA-GUUCGGCGcGGa -3'
miRNA:   3'- ccgCUGUCGGUUGUaCGAGCUGU-CCa -5'
26923 5' -54.7 NC_005809.1 + 30985 0.67 0.622501
Target:  5'- cGGCGGcCAGCCGGCGgcccUGggCGGCAuGGc -3'
miRNA:   3'- -CCGCU-GUCGGUUGU----ACgaGCUGU-CCa -5'
26923 5' -54.7 NC_005809.1 + 31476 0.68 0.5442
Target:  5'- uGGCcGCAGCCGACAaggUGCUCGcGCGc-- -3'
miRNA:   3'- -CCGcUGUCGGUUGU---ACGAGC-UGUcca -5'
26923 5' -54.7 NC_005809.1 + 32915 0.67 0.621372
Target:  5'- cGGCcACGGCCuGCAcggcugcUGUUCGGcCAGGg -3'
miRNA:   3'- -CCGcUGUCGGuUGU-------ACGAGCU-GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.