Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26924 | 3' | -53.8 | NC_005809.1 | + | 31686 | 0.66 | 0.749827 |
Target: 5'- cGGUGGAggaaUACGCCG-C-GCGcaUCGCg -3' miRNA: 3'- -CCACCUaag-GUGUGGCaGaCGC--AGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 24536 | 0.66 | 0.749827 |
Target: 5'- aGGUGGAUgaCCGCGUgGUC-GCGcagCGCg -3' miRNA: 3'- -CCACCUAa-GGUGUGgCAGaCGCa--GCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 25983 | 0.66 | 0.728526 |
Target: 5'- --cGGuUUCCuCGCCgGUCUGCGgCGUa -3' miRNA: 3'- ccaCCuAAGGuGUGG-CAGACGCaGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 18725 | 0.67 | 0.706828 |
Target: 5'- uGGUGGGUUUCGC-CUGcCUGCugGUCa- -3' miRNA: 3'- -CCACCUAAGGUGuGGCaGACG--CAGcg -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 35007 | 0.67 | 0.69586 |
Target: 5'- cGUGGAcgugUCCAaGCCGgugGCGcCGCa -3' miRNA: 3'- cCACCUa---AGGUgUGGCagaCGCaGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 19136 | 0.67 | 0.69586 |
Target: 5'- gGGUGuucggcccCCACACCGUCagccagauggaUGCGUUGUc -3' miRNA: 3'- -CCACcuaa----GGUGUGGCAG-----------ACGCAGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 5334 | 0.67 | 0.69586 |
Target: 5'- --cGGAUaCCACGCUGUCgaUGUCGUu -3' miRNA: 3'- ccaCCUAaGGUGUGGCAGacGCAGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 23401 | 0.67 | 0.69586 |
Target: 5'- cGGUGGAUaCCuugaugagcGCGCCGgUCagUGCGaCGCc -3' miRNA: 3'- -CCACCUAaGG---------UGUGGC-AG--ACGCaGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 14176 | 0.67 | 0.684828 |
Target: 5'- -cUGGcg-CCGCGCCGcCgGCGUCGa -3' miRNA: 3'- ccACCuaaGGUGUGGCaGaCGCAGCg -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 27839 | 0.67 | 0.684828 |
Target: 5'- cGGUGGcgccggCCGCGCCG-CUGCucaagaacguGUcCGCg -3' miRNA: 3'- -CCACCuaa---GGUGUGGCaGACG----------CA-GCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 35376 | 0.67 | 0.673744 |
Target: 5'- cGUGGAcaUCGCGCUGUCccggcUGCGUCa- -3' miRNA: 3'- cCACCUaaGGUGUGGCAG-----ACGCAGcg -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 28084 | 0.68 | 0.66262 |
Target: 5'- aGGUGG---CCGCGgCGUCguauucCGUCGCg -3' miRNA: 3'- -CCACCuaaGGUGUgGCAGac----GCAGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 12601 | 0.68 | 0.66262 |
Target: 5'- --cGGcugcaUCCAgGCCGUCgUGCGcCGCg -3' miRNA: 3'- ccaCCua---AGGUgUGGCAG-ACGCaGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 34799 | 0.68 | 0.640294 |
Target: 5'- gGGUGGAcgCCggcgcagaucGCGCCGgugCUGCaaUCGCu -3' miRNA: 3'- -CCACCUaaGG----------UGUGGCa--GACGc-AGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 6652 | 0.68 | 0.606773 |
Target: 5'- --cGGAgugUCCGCGCUcaugGUCUGCGccaCGCc -3' miRNA: 3'- ccaCCUa--AGGUGUGG----CAGACGCa--GCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 24098 | 0.69 | 0.584522 |
Target: 5'- cGGUGGAcgaaucggCCgACGCCGcCgGCGcCGCg -3' miRNA: 3'- -CCACCUaa------GG-UGUGGCaGaCGCaGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 15834 | 0.69 | 0.573453 |
Target: 5'- --aGGAcUCgaaCACGCCGUCcGUGUCGUg -3' miRNA: 3'- ccaCCUaAG---GUGUGGCAGaCGCAGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 18525 | 0.7 | 0.529756 |
Target: 5'- cGGcaUGGAaaCCGCAaucguCCGUC-GCGUCGCc -3' miRNA: 3'- -CC--ACCUaaGGUGU-----GGCAGaCGCAGCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 20138 | 0.7 | 0.529756 |
Target: 5'- -cUGGAcgagUCCGcCGCCGUCaagGCGUgGCu -3' miRNA: 3'- ccACCUa---AGGU-GUGGCAGa--CGCAgCG- -5' |
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26924 | 3' | -53.8 | NC_005809.1 | + | 26789 | 0.75 | 0.268407 |
Target: 5'- --aGGAccggcUCUAUGCCGUCgUGCGUCGCa -3' miRNA: 3'- ccaCCUa----AGGUGUGGCAG-ACGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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