Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26924 | 5' | -51.4 | NC_005809.1 | + | 37752 | 0.66 | 0.888946 |
Target: 5'- uCGACGACggCGCCGGccccgaccucuacaaGcUGGccuACGCCa -3' miRNA: 3'- -GCUGCUGaaGCGGCCa--------------CaACU---UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 39718 | 0.66 | 0.880509 |
Target: 5'- uCGAaccaGGCcccUCGCUGGUGcUG-GCGCCg -3' miRNA: 3'- -GCUg---CUGa--AGCGGCCACaACuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37875 | 0.66 | 0.880509 |
Target: 5'- aCGAgGGCggCGUCGGUGccuuucuCACCg -3' miRNA: 3'- -GCUgCUGaaGCGGCCACaacuu--GUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 16595 | 0.66 | 0.872554 |
Target: 5'- aGGcCGACcaCGCgaUGGUGUUG-GCGCCg -3' miRNA: 3'- gCU-GCUGaaGCG--GCCACAACuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 14617 | 0.66 | 0.872554 |
Target: 5'- gCGuCGGCUUccaugcuuccggCGCCGGUGcgcagaUUGAuaccuuGCACCu -3' miRNA: 3'- -GCuGCUGAA------------GCGGCCAC------AACU------UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 22137 | 0.66 | 0.872554 |
Target: 5'- uCGAacaGGCUUUGCaCGGUGgUGcuGCACUu -3' miRNA: 3'- -GCUg--CUGAAGCG-GCCACaACu-UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 18389 | 0.66 | 0.872554 |
Target: 5'- uGcCGAUggCGCCGGUGgcGGcCACg -3' miRNA: 3'- gCuGCUGaaGCGGCCACaaCUuGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 16861 | 0.66 | 0.872554 |
Target: 5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3' miRNA: 3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 4487 | 0.66 | 0.864334 |
Target: 5'- aCGACGAaacCGCCGGaUGcgcgcGGCGCCa -3' miRNA: 3'- -GCUGCUgaaGCGGCC-ACaac--UUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 36544 | 0.66 | 0.864334 |
Target: 5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3' miRNA: 3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 41899 | 0.66 | 0.864334 |
Target: 5'- cCGGCGcCgccguaggCGCCuGGUGgcuacagccUUGGGCACCg -3' miRNA: 3'- -GCUGCuGaa------GCGG-CCAC---------AACUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 27626 | 0.66 | 0.864334 |
Target: 5'- uGACGAUgg-GCCGGUgGUUGGucgGCAUg -3' miRNA: 3'- gCUGCUGaagCGGCCA-CAACU---UGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 10275 | 0.66 | 0.856718 |
Target: 5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3' miRNA: 3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 14177 | 0.66 | 0.855859 |
Target: 5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3' miRNA: 3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 13240 | 0.66 | 0.855859 |
Target: 5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3' miRNA: 3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 2208 | 0.66 | 0.855859 |
Target: 5'- cCGACGcCcUCGUCGG-GU--AGCACCa -3' miRNA: 3'- -GCUGCuGaAGCGGCCaCAacUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 14852 | 0.66 | 0.855859 |
Target: 5'- uGGCGGCcagCGCCGcacGcUGGGCGCCu -3' miRNA: 3'- gCUGCUGaa-GCGGCca-CaACUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37792 | 0.66 | 0.855859 |
Target: 5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3' miRNA: 3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 20182 | 0.66 | 0.853267 |
Target: 5'- -uGCGGCUUCGCCuugucgucgcccucGGUcUUGGcaGCGCCc -3' miRNA: 3'- gcUGCUGAAGCGG--------------CCAcAACU--UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 23413 | 0.67 | 0.847135 |
Target: 5'- uGAUGAgcgCGCCGGUcagUGcGACGCCg -3' miRNA: 3'- gCUGCUgaaGCGGCCAca-AC-UUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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