miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26924 5' -51.4 NC_005809.1 + 6013 1.13 0.001266
Target:  5'- gCGACGACUUCGCCGGUGUUGAACACCu -3'
miRNA:   3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 36500 0.85 0.090275
Target:  5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3'
miRNA:   3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 17258 0.79 0.217977
Target:  5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3'
miRNA:   3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5'
26924 5' -51.4 NC_005809.1 + 34997 0.75 0.381078
Target:  5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3'
miRNA:   3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 9556 0.75 0.383829
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 167 0.74 0.461821
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 23349 0.73 0.493158
Target:  5'- uCGACGGCcUCGCCGccGaUGAACACg -3'
miRNA:   3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 27615 0.73 0.493158
Target:  5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3'
miRNA:   3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 25797 0.72 0.521082
Target:  5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3'
miRNA:   3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 8020 0.71 0.614675
Target:  5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3'
miRNA:   3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 25561 0.71 0.614675
Target:  5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3'
miRNA:   3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13188 0.71 0.614675
Target:  5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3'
miRNA:   3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 39127 0.71 0.626002
Target:  5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3'
miRNA:   3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5'
26924 5' -51.4 NC_005809.1 + 4828 0.71 0.637335
Target:  5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5'
26924 5' -51.4 NC_005809.1 + 24590 0.7 0.664492
Target:  5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3'
miRNA:   3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13096 0.7 0.664492
Target:  5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3'
miRNA:   3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 35447 0.7 0.671259
Target:  5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3'
miRNA:   3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5'
26924 5' -51.4 NC_005809.1 + 40559 0.7 0.693698
Target:  5'- -cGCGACUUCGCCaGc---GAGCGCCu -3'
miRNA:   3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 22452 0.69 0.704829
Target:  5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3'
miRNA:   3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 24082 0.69 0.704829
Target:  5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3'
miRNA:   3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.