Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26924 | 5' | -51.4 | NC_005809.1 | + | 20474 | 0.69 | 0.719185 |
Target: 5'- uCGGCGAaggccauagccaucgCGuuGGUGUUGAACgaaaGCCg -3' miRNA: 3'- -GCUGCUgaa------------GCggCCACAACUUG----UGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 16423 | 0.69 | 0.715885 |
Target: 5'- aCGGCcGCgggguaaUCGCCGGcggcGUUGAACACg -3' miRNA: 3'- -GCUGcUGa------AGCGGCCa---CAACUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 24082 | 0.69 | 0.704829 |
Target: 5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3' miRNA: 3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 22452 | 0.69 | 0.704829 |
Target: 5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3' miRNA: 3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 40559 | 0.7 | 0.693698 |
Target: 5'- -cGCGACUUCGCCaGc---GAGCGCCu -3' miRNA: 3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 35447 | 0.7 | 0.671259 |
Target: 5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3' miRNA: 3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 13096 | 0.7 | 0.664492 |
Target: 5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3' miRNA: 3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 24590 | 0.7 | 0.664492 |
Target: 5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3' miRNA: 3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 4828 | 0.71 | 0.637335 |
Target: 5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 39127 | 0.71 | 0.626002 |
Target: 5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3' miRNA: 3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 13188 | 0.71 | 0.614675 |
Target: 5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3' miRNA: 3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 25561 | 0.71 | 0.614675 |
Target: 5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3' miRNA: 3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 8020 | 0.71 | 0.614675 |
Target: 5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3' miRNA: 3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 25797 | 0.72 | 0.521082 |
Target: 5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3' miRNA: 3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 27615 | 0.73 | 0.493158 |
Target: 5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3' miRNA: 3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 23349 | 0.73 | 0.493158 |
Target: 5'- uCGACGGCcUCGCCGccGaUGAACACg -3' miRNA: 3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 167 | 0.74 | 0.461821 |
Target: 5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3' miRNA: 3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 9556 | 0.75 | 0.383829 |
Target: 5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3' miRNA: 3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 34997 | 0.75 | 0.381078 |
Target: 5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3' miRNA: 3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 17258 | 0.79 | 0.217977 |
Target: 5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3' miRNA: 3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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