miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26924 5' -51.4 NC_005809.1 + 167 0.74 0.461821
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 730 0.67 0.828979
Target:  5'- gGGCGGCUUUGCCGac----AACGCCg -3'
miRNA:   3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 2208 0.66 0.855859
Target:  5'- cCGACGcCcUCGUCGG-GU--AGCACCa -3'
miRNA:   3'- -GCUGCuGaAGCGGCCaCAacUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 4285 0.67 0.838172
Target:  5'- uGAUGGCcgugUCGgCGGUGaacuGCACCa -3'
miRNA:   3'- gCUGCUGa---AGCgGCCACaacuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 4487 0.66 0.864334
Target:  5'- aCGACGAaacCGCCGGaUGcgcgcGGCGCCa -3'
miRNA:   3'- -GCUGCUgaaGCGGCC-ACaac--UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 4828 0.71 0.637335
Target:  5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5'
26924 5' -51.4 NC_005809.1 + 5225 0.67 0.809946
Target:  5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3'
miRNA:   3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5'
26924 5' -51.4 NC_005809.1 + 5636 0.67 0.819567
Target:  5'- gCGGCGcaGCUU-GCUGGUGgcUGGACGCg -3'
miRNA:   3'- -GCUGC--UGAAgCGGCCACa-ACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 6013 1.13 0.001266
Target:  5'- gCGACGACUUCGCCGGUGUUGAACACCu -3'
miRNA:   3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 8020 0.71 0.614675
Target:  5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3'
miRNA:   3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 9556 0.75 0.383829
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 10275 0.66 0.856718
Target:  5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3'
miRNA:   3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5'
26924 5' -51.4 NC_005809.1 + 12088 0.68 0.7696
Target:  5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3'
miRNA:   3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5'
26924 5' -51.4 NC_005809.1 + 13096 0.7 0.664492
Target:  5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3'
miRNA:   3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13188 0.71 0.614675
Target:  5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3'
miRNA:   3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13240 0.66 0.855859
Target:  5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3'
miRNA:   3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13342 0.68 0.800127
Target:  5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3'
miRNA:   3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 14177 0.66 0.855859
Target:  5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3'
miRNA:   3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 14617 0.66 0.872554
Target:  5'- gCGuCGGCUUccaugcuuccggCGCCGGUGcgcagaUUGAuaccuuGCACCu -3'
miRNA:   3'- -GCuGCUGAA------------GCGGCCAC------AACU------UGUGG- -5'
26924 5' -51.4 NC_005809.1 + 14669 0.67 0.847135
Target:  5'- uGGCcugggUGCgGGUGUUGAGCGCUu -3'
miRNA:   3'- gCUGcugaaGCGgCCACAACUUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.