Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26924 | 5' | -51.4 | NC_005809.1 | + | 25797 | 0.72 | 0.521082 |
Target: 5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3' miRNA: 3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 27615 | 0.73 | 0.493158 |
Target: 5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3' miRNA: 3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 27626 | 0.66 | 0.864334 |
Target: 5'- uGACGAUgg-GCCGGUgGUUGGucgGCAUg -3' miRNA: 3'- gCUGCUGaagCGGCCA-CAACU---UGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 28142 | 0.67 | 0.828979 |
Target: 5'- gGGCGGCagcagcUUGCCGGUGgucaGAucgaccACGCCg -3' miRNA: 3'- gCUGCUGa-----AGCGGCCACaa--CU------UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 28227 | 0.69 | 0.737722 |
Target: 5'- cCGACGACcaCGCgCGG-GUcGGACugCg -3' miRNA: 3'- -GCUGCUGaaGCG-GCCaCAaCUUGugG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 30684 | 0.68 | 0.800127 |
Target: 5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3' miRNA: 3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 34337 | 0.67 | 0.838172 |
Target: 5'- -aGCGACUUCGCCGacga-GGGCACg -3' miRNA: 3'- gcUGCUGAAGCGGCcacaaCUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 34997 | 0.75 | 0.381078 |
Target: 5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3' miRNA: 3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 35335 | 0.67 | 0.828979 |
Target: 5'- gCGGcCGACaUCGCCGaGgg-UGAGCGCg -3' miRNA: 3'- -GCU-GCUGaAGCGGC-CacaACUUGUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 35447 | 0.7 | 0.671259 |
Target: 5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3' miRNA: 3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 36500 | 0.85 | 0.090275 |
Target: 5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3' miRNA: 3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 36544 | 0.66 | 0.864334 |
Target: 5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3' miRNA: 3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37752 | 0.66 | 0.888946 |
Target: 5'- uCGACGACggCGCCGGccccgaccucuacaaGcUGGccuACGCCa -3' miRNA: 3'- -GCUGCUGaaGCGGCCa--------------CaACU---UGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37753 | 0.68 | 0.803093 |
Target: 5'- aCGGCGACcugUCGCCGGccagcaaucccgcAGCGCCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCCacaac--------UUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37792 | 0.66 | 0.855859 |
Target: 5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3' miRNA: 3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 37875 | 0.66 | 0.880509 |
Target: 5'- aCGAgGGCggCGUCGGUGccuuucuCACCg -3' miRNA: 3'- -GCUgCUGaaGCGGCCACaacuu--GUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 39127 | 0.71 | 0.626002 |
Target: 5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3' miRNA: 3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 39718 | 0.66 | 0.880509 |
Target: 5'- uCGAaccaGGCcccUCGCUGGUGcUG-GCGCCg -3' miRNA: 3'- -GCUg---CUGa--AGCGGCCACaACuUGUGG- -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 40548 | 0.68 | 0.759107 |
Target: 5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3' miRNA: 3'- gCUGCUGaa---GCGGCCACaACUugUGg -5' |
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26924 | 5' | -51.4 | NC_005809.1 | + | 40559 | 0.7 | 0.693698 |
Target: 5'- -cGCGACUUCGCCaGc---GAGCGCCu -3' miRNA: 3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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