miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26924 5' -51.4 NC_005809.1 + 730 0.67 0.828979
Target:  5'- gGGCGGCUUUGCCGac----AACGCCg -3'
miRNA:   3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 16423 0.69 0.715885
Target:  5'- aCGGCcGCgggguaaUCGCCGGcggcGUUGAACACg -3'
miRNA:   3'- -GCUGcUGa------AGCGGCCa---CAACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 20474 0.69 0.719185
Target:  5'- uCGGCGAaggccauagccaucgCGuuGGUGUUGAACgaaaGCCg -3'
miRNA:   3'- -GCUGCUgaa------------GCggCCACAACUUG----UGG- -5'
26924 5' -51.4 NC_005809.1 + 28227 0.69 0.737722
Target:  5'- cCGACGACcaCGCgCGG-GUcGGACugCg -3'
miRNA:   3'- -GCUGCUGaaGCG-GCCaCAaCUUGugG- -5'
26924 5' -51.4 NC_005809.1 + 24167 0.69 0.748477
Target:  5'- uCGACGGCUgcgCGCUucgGcGUGUccaUGAGCGCg -3'
miRNA:   3'- -GCUGCUGAa--GCGG---C-CACA---ACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 40548 0.68 0.759107
Target:  5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3'
miRNA:   3'- gCUGCUGaa---GCGGCCACaACUugUGg -5'
26924 5' -51.4 NC_005809.1 + 17565 0.68 0.7696
Target:  5'- uGAUGuCggCGCCGGUGUUGucgauuuCGCa -3'
miRNA:   3'- gCUGCuGaaGCGGCCACAACuu-----GUGg -5'
26924 5' -51.4 NC_005809.1 + 30684 0.68 0.800127
Target:  5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3'
miRNA:   3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5'
26924 5' -51.4 NC_005809.1 + 5225 0.67 0.809946
Target:  5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3'
miRNA:   3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5'
26924 5' -51.4 NC_005809.1 + 24082 0.69 0.704829
Target:  5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3'
miRNA:   3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 35447 0.7 0.671259
Target:  5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3'
miRNA:   3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5'
26924 5' -51.4 NC_005809.1 + 4828 0.71 0.637335
Target:  5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5'
26924 5' -51.4 NC_005809.1 + 36500 0.85 0.090275
Target:  5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3'
miRNA:   3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 34997 0.75 0.381078
Target:  5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3'
miRNA:   3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 9556 0.75 0.383829
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 167 0.74 0.461821
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 23349 0.73 0.493158
Target:  5'- uCGACGGCcUCGCCGccGaUGAACACg -3'
miRNA:   3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 13188 0.71 0.614675
Target:  5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3'
miRNA:   3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 25561 0.71 0.614675
Target:  5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3'
miRNA:   3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 39127 0.71 0.626002
Target:  5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3'
miRNA:   3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.