miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26924 5' -51.4 NC_005809.1 + 17258 0.79 0.217977
Target:  5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3'
miRNA:   3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5'
26924 5' -51.4 NC_005809.1 + 37792 0.66 0.855859
Target:  5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3'
miRNA:   3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 36544 0.66 0.864334
Target:  5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3'
miRNA:   3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 16861 0.66 0.872554
Target:  5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3'
miRNA:   3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5'
26924 5' -51.4 NC_005809.1 + 24590 0.7 0.664492
Target:  5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3'
miRNA:   3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13096 0.7 0.664492
Target:  5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3'
miRNA:   3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 22452 0.69 0.704829
Target:  5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3'
miRNA:   3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 12088 0.68 0.7696
Target:  5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3'
miRNA:   3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5'
26924 5' -51.4 NC_005809.1 + 37753 0.68 0.803093
Target:  5'- aCGGCGACcugUCGCCGGccagcaaucccgcAGCGCCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCCacaac--------UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 14177 0.66 0.855859
Target:  5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3'
miRNA:   3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 35335 0.67 0.828979
Target:  5'- gCGGcCGACaUCGCCGaGgg-UGAGCGCg -3'
miRNA:   3'- -GCU-GCUGaAGCGGC-CacaACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 13342 0.68 0.800127
Target:  5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3'
miRNA:   3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 27615 0.73 0.493158
Target:  5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3'
miRNA:   3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5'
26924 5' -51.4 NC_005809.1 + 42164 0.67 0.847135
Target:  5'- cCGACGAUcacCGCCGuGcUGcuggUGGGCGCCc -3'
miRNA:   3'- -GCUGCUGaa-GCGGC-C-ACa---ACUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 25797 0.72 0.521082
Target:  5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3'
miRNA:   3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 24726 0.68 0.7696
Target:  5'- gGGCGACgagGCCacGGUGgcGGGCAUCa -3'
miRNA:   3'- gCUGCUGaagCGG--CCACaaCUUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 13240 0.66 0.855859
Target:  5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3'
miRNA:   3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5'
26924 5' -51.4 NC_005809.1 + 10275 0.66 0.856718
Target:  5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3'
miRNA:   3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5'
26924 5' -51.4 NC_005809.1 + 8020 0.71 0.614675
Target:  5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3'
miRNA:   3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5'
26924 5' -51.4 NC_005809.1 + 40559 0.7 0.693698
Target:  5'- -cGCGACUUCGCCaGc---GAGCGCCu -3'
miRNA:   3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.