miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26927 5' -61.8 NC_005809.1 + 7611 0.66 0.303571
Target:  5'- cAGCAcGUGGucGCGCagcgCCGGACACguggCCUUg -3'
miRNA:   3'- -UCGU-CGCC--CGCG----GGCCUGUGaa--GGAG- -5'
26927 5' -61.8 NC_005809.1 + 30082 0.66 0.29622
Target:  5'- ---uGUGcGGCGCCCGGGCGCcacggcCCUUg -3'
miRNA:   3'- ucguCGC-CCGCGGGCCUGUGaa----GGAG- -5'
26927 5' -61.8 NC_005809.1 + 41287 0.66 0.29622
Target:  5'- cGCGGCGGuGUGggCGGGCAUcaCCUCg -3'
miRNA:   3'- uCGUCGCC-CGCggGCCUGUGaaGGAG- -5'
26927 5' -61.8 NC_005809.1 + 7544 0.66 0.288295
Target:  5'- cGGCGGCGugcucgaucugcGGCGCCaccggcuUGGACACgUCCa- -3'
miRNA:   3'- -UCGUCGC------------CCGCGG-------GCCUGUGaAGGag -5'
26927 5' -61.8 NC_005809.1 + 12490 0.66 0.27984
Target:  5'- gGGCcGU-GGCGCCCGGGCGCcgcacaaaggauauUUCCg- -3'
miRNA:   3'- -UCGuCGcCCGCGGGCCUGUG--------------AAGGag -5'
26927 5' -61.8 NC_005809.1 + 38701 0.67 0.272946
Target:  5'- cGGCAGCGcggccuacagcgacGGCGCCUGGuACAaCUUCg-- -3'
miRNA:   3'- -UCGUCGC--------------CCGCGGGCC-UGU-GAAGgag -5'
26927 5' -61.8 NC_005809.1 + 22022 0.67 0.268202
Target:  5'- gAGCAGCaagcggGGGCGCCgcaucgUGuGGCGCUUUCUg -3'
miRNA:   3'- -UCGUCG------CCCGCGG------GC-CUGUGAAGGAg -5'
26927 5' -61.8 NC_005809.1 + 13456 0.67 0.255014
Target:  5'- uGGCGGCcucGGGCGCggugUCGGGCAUgaCCUg -3'
miRNA:   3'- -UCGUCG---CCCGCG----GGCCUGUGaaGGAg -5'
26927 5' -61.8 NC_005809.1 + 33178 0.67 0.255014
Target:  5'- uGCggaAGUGGGCGCCCucGGCACggCCa- -3'
miRNA:   3'- uCG---UCGCCCGCGGGc-CUGUGaaGGag -5'
26927 5' -61.8 NC_005809.1 + 28592 0.67 0.248622
Target:  5'- cGGCAGCGuGGUG-UCGGuCAgUUCCUUg -3'
miRNA:   3'- -UCGUCGC-CCGCgGGCCuGUgAAGGAG- -5'
26927 5' -61.8 NC_005809.1 + 16320 0.68 0.230239
Target:  5'- aGGcCGGCGGGUGCCCGuGC-CUUCg-- -3'
miRNA:   3'- -UC-GUCGCCCGCGGGCcUGuGAAGgag -5'
26927 5' -61.8 NC_005809.1 + 42388 0.68 0.230239
Target:  5'- cGGCAGCGugacGGUGCCCagcgacaccgGGGCGCaUCCg- -3'
miRNA:   3'- -UCGUCGC----CCGCGGG----------CCUGUGaAGGag -5'
26927 5' -61.8 NC_005809.1 + 13718 0.68 0.230239
Target:  5'- cGUGGCGcGGCGCUgGGACAgCUUCg-- -3'
miRNA:   3'- uCGUCGC-CCGCGGgCCUGU-GAAGgag -5'
26927 5' -61.8 NC_005809.1 + 8172 0.68 0.22437
Target:  5'- uGC-GCGuGCGCCCGGAUGCUgCCg- -3'
miRNA:   3'- uCGuCGCcCGCGGGCCUGUGAaGGag -5'
26927 5' -61.8 NC_005809.1 + 15145 0.68 0.21863
Target:  5'- uGGCGGCGGauGCGCCCaGGGCgacgGCUgauguugcUCCUg -3'
miRNA:   3'- -UCGUCGCC--CGCGGG-CCUG----UGA--------AGGAg -5'
26927 5' -61.8 NC_005809.1 + 15836 0.68 0.21863
Target:  5'- cGCAGCGGGCGCgcuggCGGugGCccggCUUUg -3'
miRNA:   3'- uCGUCGCCCGCGg----GCCugUGaa--GGAG- -5'
26927 5' -61.8 NC_005809.1 + 41896 0.68 0.21863
Target:  5'- cGGcCGGCGccgccguaGGCGCCUGGugGCUacagCCUUg -3'
miRNA:   3'- -UC-GUCGC--------CCGCGGGCCugUGAa---GGAG- -5'
26927 5' -61.8 NC_005809.1 + 7381 0.69 0.202158
Target:  5'- cAGCGGCGGGCaCCgCGGcgAC-CUUCCa- -3'
miRNA:   3'- -UCGUCGCCCGcGG-GCC--UGuGAAGGag -5'
26927 5' -61.8 NC_005809.1 + 32565 0.69 0.202158
Target:  5'- gGGCGGgggcCGGGCGCgCGG-CACUUUCg- -3'
miRNA:   3'- -UCGUC----GCCCGCGgGCCuGUGAAGGag -5'
26927 5' -61.8 NC_005809.1 + 14734 0.69 0.202158
Target:  5'- gAGCAGCGGcGCGgCCGG-CGCcaCCg- -3'
miRNA:   3'- -UCGUCGCC-CGCgGGCCuGUGaaGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.