miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26928 3' -55.8 NC_005809.1 + 21809 0.67 0.527037
Target:  5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3'
miRNA:   3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5'
26928 3' -55.8 NC_005809.1 + 24304 0.67 0.516263
Target:  5'- gGCGgugaGGUCGGCGA--GCAGC-CgCGGg -3'
miRNA:   3'- aCGCg---UCAGUCGCUaaCGUCGuG-GCC- -5'
26928 3' -55.8 NC_005809.1 + 455 0.67 0.505579
Target:  5'- cUGCGCGGcCAGC--UUGCgGGCGCUGu -3'
miRNA:   3'- -ACGCGUCaGUCGcuAACG-UCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 11744 0.67 0.505579
Target:  5'- uUGUGCGaacugaUCGGCGAcaggUUGCAGCggauuuGCCGGc -3'
miRNA:   3'- -ACGCGUc-----AGUCGCU----AACGUCG------UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 5012 0.67 0.505579
Target:  5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3'
miRNA:   3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 5242 0.67 0.505579
Target:  5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3'
miRNA:   3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5'
26928 3' -55.8 NC_005809.1 + 30435 0.68 0.499215
Target:  5'- aGCGCGGgCAGgGccucgcccugaaucaGUUGCcagggGGCGCCGGu -3'
miRNA:   3'- aCGCGUCaGUCgC---------------UAACG-----UCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 3562 0.68 0.494992
Target:  5'- aGCGCAG-CAGCGGgcuggGCGuaCACCGa -3'
miRNA:   3'- aCGCGUCaGUCGCUaa---CGUc-GUGGCc -5'
26928 3' -55.8 NC_005809.1 + 14359 0.68 0.484506
Target:  5'- cGCGguGUCcuggaaGGCGGggGCAuccGCGCCGcGg -3'
miRNA:   3'- aCGCguCAG------UCGCUaaCGU---CGUGGC-C- -5'
26928 3' -55.8 NC_005809.1 + 31140 0.68 0.484506
Target:  5'- cGCGCcuuaUCGGCGAccUGCA-CGCCGGc -3'
miRNA:   3'- aCGCGuc--AGUCGCUa-ACGUcGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 608 0.68 0.474127
Target:  5'- cUGCG-GGUCGGCca--GCAGCGCCGu -3'
miRNA:   3'- -ACGCgUCAGUCGcuaaCGUCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 27649 0.68 0.474127
Target:  5'- cGCGCAGUCGGCacUUG-AG-GCCGGc -3'
miRNA:   3'- aCGCGUCAGUCGcuAACgUCgUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 14741 0.68 0.474127
Target:  5'- gGCGCGGcCGGCGccaccgcggGCAGCGCgCGc -3'
miRNA:   3'- aCGCGUCaGUCGCuaa------CGUCGUG-GCc -5'
26928 3' -55.8 NC_005809.1 + 34414 0.68 0.453713
Target:  5'- gGCGCAcgcgCAGgGAc-GCAGCGCCGa -3'
miRNA:   3'- aCGCGUca--GUCgCUaaCGUCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 20398 0.68 0.452705
Target:  5'- cGCGCAGauggugcgcgaauUCGGCaagGAcaagUGCAGCACCa- -3'
miRNA:   3'- aCGCGUC-------------AGUCG---CUa---ACGUCGUGGcc -5'
26928 3' -55.8 NC_005809.1 + 7599 0.68 0.443686
Target:  5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3'
miRNA:   3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 8305 0.68 0.443686
Target:  5'- aGUGCAGcCAGCGGU-GC-GCGCUGc -3'
miRNA:   3'- aCGCGUCaGUCGCUAaCGuCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 10868 0.69 0.433786
Target:  5'- cGCGCggcgggcuGGUCAgGCGGUgcUGCAGCaguuACUGGu -3'
miRNA:   3'- aCGCG--------UCAGU-CGCUA--ACGUCG----UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 15571 0.69 0.433786
Target:  5'- gGCGCcGUCAGUGAcgacGC-GCugCGGa -3'
miRNA:   3'- aCGCGuCAGUCGCUaa--CGuCGugGCC- -5'
26928 3' -55.8 NC_005809.1 + 393 0.69 0.432803
Target:  5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.