Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26928 | 5' | -64.2 | NC_005809.1 | + | 7784 | 1.08 | 0.000137 |
Target: 5'- gCGCCGGCGUCCACCCUUCGCCGCCCAg -3' miRNA: 3'- -GCGGCCGCAGGUGGGAAGCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 32329 | 0.78 | 0.032126 |
Target: 5'- gGCCGGCGUCCcgaCaacCGCCGCCCAg -3' miRNA: 3'- gCGGCCGCAGGug-GgaaGCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 29613 | 0.73 | 0.072195 |
Target: 5'- uGCCGGUGUCCAUUCgcgCGaacaucCCGCCCGa -3' miRNA: 3'- gCGGCCGCAGGUGGGaa-GC------GGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 34677 | 0.73 | 0.078412 |
Target: 5'- aGCUGGCGaUCUACgCacgCGCCGCCCu -3' miRNA: 3'- gCGGCCGC-AGGUGgGaa-GCGGCGGGu -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 7929 | 0.72 | 0.092416 |
Target: 5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3' miRNA: 3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 1503 | 0.72 | 0.09759 |
Target: 5'- uGCUGGuCGgacauggcgCC-CCCUuauUCGCCGCCCAg -3' miRNA: 3'- gCGGCC-GCa--------GGuGGGA---AGCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 693 | 0.71 | 0.100279 |
Target: 5'- gCGCCGGCcgggCCGCCCaagauaCCGCCCAg -3' miRNA: 3'- -GCGGCCGca--GGUGGGaagc--GGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 33994 | 0.71 | 0.103037 |
Target: 5'- uCGCCGugaccgucGUGUCgCGCCUgUCGCUGCCCGc -3' miRNA: 3'- -GCGGC--------CGCAG-GUGGGaAGCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 5528 | 0.71 | 0.108769 |
Target: 5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3' miRNA: 3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 18093 | 0.71 | 0.11793 |
Target: 5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3' miRNA: 3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 7231 | 0.7 | 0.124432 |
Target: 5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3' miRNA: 3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 16792 | 0.7 | 0.124432 |
Target: 5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3' miRNA: 3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 8184 | 0.7 | 0.13481 |
Target: 5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3' miRNA: 3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 6396 | 0.69 | 0.145979 |
Target: 5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3' miRNA: 3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 8625 | 0.69 | 0.153888 |
Target: 5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3' miRNA: 3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 29241 | 0.69 | 0.16648 |
Target: 5'- uCGgCGGCGaCCugCCgaaagccuaCGCCGCCUAc -3' miRNA: 3'- -GCgGCCGCaGGugGGaa-------GCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 14187 | 0.68 | 0.183278 |
Target: 5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3' miRNA: 3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 31131 | 0.68 | 0.184703 |
Target: 5'- uGCCGGUGUCgCGCCUUaUCGgCGaCCUg -3' miRNA: 3'- gCGGCCGCAG-GUGGGA-AGCgGC-GGGu -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 3988 | 0.68 | 0.189527 |
Target: 5'- aCGCCaGCagauagauGUCCGCCCaaaacgCGCCGgCCAc -3' miRNA: 3'- -GCGGcCG--------CAGGUGGGaa----GCGGCgGGU- -5' |
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26928 | 5' | -64.2 | NC_005809.1 | + | 8050 | 0.68 | 0.189527 |
Target: 5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3' miRNA: 3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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