miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26929 3' -53.6 NC_005809.1 + 34101 0.66 0.753885
Target:  5'- cGCGUcggcUGCgGCAUCGCag-GCcACCUCGa -3'
miRNA:   3'- -CGCAa---ACG-CGUAGUGcgaCG-UGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 20254 0.66 0.753885
Target:  5'- cGCGUUcgGCacggccagcaGCAUCGUGCUGCccgACUUCGa -3'
miRNA:   3'- -CGCAAa-CG----------CGUAGUGCGACG---UGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 9517 0.66 0.743168
Target:  5'- gGCGaacagUG-GCAUCAUGCUGCgGCCcuguUCGg -3'
miRNA:   3'- -CGCaa---ACgCGUAGUGCGACG-UGG----AGC- -5'
26929 3' -53.6 NC_005809.1 + 38865 0.66 0.743168
Target:  5'- aGCGgaUGCGCcgCAUgggGCaGCGCgUCGc -3'
miRNA:   3'- -CGCaaACGCGuaGUG---CGaCGUGgAGC- -5'
26929 3' -53.6 NC_005809.1 + 27752 0.66 0.743168
Target:  5'- -----cGCGCAaCuCGCUGC-CCUCGu -3'
miRNA:   3'- cgcaaaCGCGUaGuGCGACGuGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 14770 0.66 0.739929
Target:  5'- aGCGUgucggUGUcgaucuGCuUCACGaugucgcuggaaacCUGCACCUCGg -3'
miRNA:   3'- -CGCAa----ACG------CGuAGUGC--------------GACGUGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 11081 0.66 0.721389
Target:  5'- cGUGUccGgGUcgCGCGCgaGCACCUUGu -3'
miRNA:   3'- -CGCAaaCgCGuaGUGCGa-CGUGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 10098 0.66 0.721389
Target:  5'- uCGg--GCGCAUCGgcCGCcccCACCUCGg -3'
miRNA:   3'- cGCaaaCGCGUAGU--GCGac-GUGGAGC- -5'
26929 3' -53.6 NC_005809.1 + 37438 0.66 0.699232
Target:  5'- cCGccUGCGCggCACGUUGCAgUUCa -3'
miRNA:   3'- cGCaaACGCGuaGUGCGACGUgGAGc -5'
26929 3' -53.6 NC_005809.1 + 12549 0.67 0.688043
Target:  5'- gGCGUcggugaauuucUUGCcgGCcUCGCGCUGCGCggCGa -3'
miRNA:   3'- -CGCA-----------AACG--CGuAGUGCGACGUGgaGC- -5'
26929 3' -53.6 NC_005809.1 + 40002 0.67 0.676797
Target:  5'- aGCGc--GCGCA-CGCGCUGgGCCgugUCGc -3'
miRNA:   3'- -CGCaaaCGCGUaGUGCGACgUGG---AGC- -5'
26929 3' -53.6 NC_005809.1 + 2947 0.67 0.676797
Target:  5'- ------cCGCGUCGCGCgGCACgUCGa -3'
miRNA:   3'- cgcaaacGCGUAGUGCGaCGUGgAGC- -5'
26929 3' -53.6 NC_005809.1 + 1667 0.67 0.665507
Target:  5'- cUGUUUGCGCGUgAUGCUGCcgcGCagguagUCGa -3'
miRNA:   3'- cGCAAACGCGUAgUGCGACG---UGg-----AGC- -5'
26929 3' -53.6 NC_005809.1 + 8342 0.67 0.665507
Target:  5'- cGCGUgcGUGC-UCAUGCcaGUACCUCc -3'
miRNA:   3'- -CGCAaaCGCGuAGUGCGa-CGUGGAGc -5'
26929 3' -53.6 NC_005809.1 + 26988 0.67 0.654182
Target:  5'- gGCGcg-GUGCAUC-CGCaGCGCgUCGu -3'
miRNA:   3'- -CGCaaaCGCGUAGuGCGaCGUGgAGC- -5'
26929 3' -53.6 NC_005809.1 + 27837 0.67 0.642836
Target:  5'- cGCGgugGCGCcggcCGCGCcGCugCUCa -3'
miRNA:   3'- -CGCaaaCGCGua--GUGCGaCGugGAGc -5'
26929 3' -53.6 NC_005809.1 + 12608 0.68 0.60878
Target:  5'- --aUUUGCGCAUgGCGCcGaCGCgCUCGg -3'
miRNA:   3'- cgcAAACGCGUAgUGCGaC-GUG-GAGC- -5'
26929 3' -53.6 NC_005809.1 + 30447 0.68 0.586165
Target:  5'- cGCGUg-GCGCGUCGCGCca-ACCUg- -3'
miRNA:   3'- -CGCAaaCGCGUAGUGCGacgUGGAgc -5'
26929 3' -53.6 NC_005809.1 + 15102 0.68 0.586165
Target:  5'- cGCGUggugcgUGCGCggCGCGCUggcauaccaGCGCCagGg -3'
miRNA:   3'- -CGCAa-----ACGCGuaGUGCGA---------CGUGGagC- -5'
26929 3' -53.6 NC_005809.1 + 6010 0.69 0.563714
Target:  5'- aGCGUgcGUGCcguUCugGauagGCACCUCGc -3'
miRNA:   3'- -CGCAaaCGCGu--AGugCga--CGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.