Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26929 | 5' | -60.4 | NC_005809.1 | + | 36807 | 0.66 | 0.38906 |
Target: 5'- -aCGAUGgucaaGGCccUGGCGcacucgcugcCCGGCGCGCUg -3' miRNA: 3'- caGCUAC-----UCGc-ACCGU----------GGCCGCGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 10853 | 0.66 | 0.380212 |
Target: 5'- gGUCGAgcagGcccuGCGUGGCuuCGGUcgGCGCg -3' miRNA: 3'- -CAGCUa---Cu---CGCACCGugGCCG--CGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 22448 | 0.66 | 0.379335 |
Target: 5'- -cCGAaG-GCGUGGCAUucgacgaCGGUGUGCUg -3' miRNA: 3'- caGCUaCuCGCACCGUG-------GCCGCGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 18814 | 0.66 | 0.3715 |
Target: 5'- -gCGcAUcGGCccgGUGGCGCCGGCaugGCGCUg -3' miRNA: 3'- caGC-UAcUCG---CACCGUGGCCG---CGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 37680 | 0.66 | 0.366339 |
Target: 5'- uGUCGAacaucgaaggacgcaUGAuuGCGUGGCucGCCGGCGaggauuggaaGCUg -3' miRNA: 3'- -CAGCU---------------ACU--CGCACCG--UGGCCGCg---------CGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 21101 | 0.66 | 0.362925 |
Target: 5'- cGUCGGUGAGCGcguuuugcuugcUGGUAUCGaCGCuGCc -3' miRNA: 3'- -CAGCUACUCGC------------ACCGUGGCcGCG-CGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 5243 | 0.66 | 0.362925 |
Target: 5'- -aCGGUGuugacguuGGCGuUGGCACCGGCcaccGUGUUg -3' miRNA: 3'- caGCUAC--------UCGC-ACCGUGGCCG----CGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 219 | 0.66 | 0.362925 |
Target: 5'- -gCGAacUG-GCGcaccucGGCAUUGGCGCGCUg -3' miRNA: 3'- caGCU--ACuCGCa-----CCGUGGCCGCGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 19151 | 0.66 | 0.362925 |
Target: 5'- -cCGGccGGCGUcGCacugACCGGCGCGCUc -3' miRNA: 3'- caGCUacUCGCAcCG----UGGCCGCGCGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 28759 | 0.66 | 0.346191 |
Target: 5'- -cCGccGAGUGgcaggaGGCACaGGCGCGCa -3' miRNA: 3'- caGCuaCUCGCa-----CCGUGgCCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 14618 | 0.67 | 0.338033 |
Target: 5'- cGUCGGcuuccauGCuuccGGCGCCGGUGCGCa -3' miRNA: 3'- -CAGCUacu----CGca--CCGUGGCCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 27829 | 0.67 | 0.338033 |
Target: 5'- -gCGcUGcccGCgGUGGCGCCGGCcGCGCc -3' miRNA: 3'- caGCuACu--CG-CACCGUGGCCG-CGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 16759 | 0.67 | 0.330016 |
Target: 5'- cUCG-UGGGCGUaGcCACCGGCGaCGUg -3' miRNA: 3'- cAGCuACUCGCAcC-GUGGCCGC-GCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 34528 | 0.67 | 0.322141 |
Target: 5'- gGUCGAgcagcgguUGAGCGUcgaGGCugucACCGGCGaaGCUg -3' miRNA: 3'- -CAGCU--------ACUCGCA---CCG----UGGCCGCg-CGA- -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 28992 | 0.67 | 0.314406 |
Target: 5'- --aGGUGAGCGaUGGCGa--GCGCGCg -3' miRNA: 3'- cagCUACUCGC-ACCGUggcCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 18425 | 0.67 | 0.306813 |
Target: 5'- cGUCGA--GGCGcUGG-GCCaGGCGCGCa -3' miRNA: 3'- -CAGCUacUCGC-ACCgUGG-CCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 4178 | 0.67 | 0.306813 |
Target: 5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3' miRNA: 3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 11411 | 0.68 | 0.29205 |
Target: 5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3' miRNA: 3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 38060 | 0.68 | 0.29205 |
Target: 5'- -gCGAUGcGCucaagcgccuGUGGCGCCG-CGCGCa -3' miRNA: 3'- caGCUACuCG----------CACCGUGGCcGCGCGa -5' |
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26929 | 5' | -60.4 | NC_005809.1 | + | 8162 | 0.68 | 0.29205 |
Target: 5'- cUCGAUGAuGCGgcccaggaaGGCGCUGGCGUcCUg -3' miRNA: 3'- cAGCUACU-CGCa--------CCGUGGCCGCGcGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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