miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2693 3' -49.8 NC_001491.2 + 19250 0.66 0.997517
Target:  5'- uUCUccACGCCACcaucgAG-CCAACAC--ACGUa -3'
miRNA:   3'- -AGA--UGCGGUG-----UCaGGUUGUGauUGCG- -5'
2693 3' -49.8 NC_001491.2 + 57201 0.66 0.997517
Target:  5'- --cACGUCACAGUCacuAUAC--GCGCu -3'
miRNA:   3'- agaUGCGGUGUCAGgu-UGUGauUGCG- -5'
2693 3' -49.8 NC_001491.2 + 77694 0.66 0.997517
Target:  5'- cUCcGCGCUAacuGGcCUAGCGCUAaugGCGCg -3'
miRNA:   3'- -AGaUGCGGUg--UCaGGUUGUGAU---UGCG- -5'
2693 3' -49.8 NC_001491.2 + 78447 0.66 0.997517
Target:  5'- aCU-CGCCGCuugagcucugAGaCCAGCAC-GGCGCg -3'
miRNA:   3'- aGAuGCGGUG----------UCaGGUUGUGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 121862 0.66 0.997517
Target:  5'- cUCUGCucgggcagcaGCUGCAGgagggacugCCAGCACUcgaguguggGGCGCg -3'
miRNA:   3'- -AGAUG----------CGGUGUCa--------GGUUGUGA---------UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 132684 0.66 0.997053
Target:  5'- aCUAgGCCGgcgauaccCAaaCCGACGCUGAUGCc -3'
miRNA:   3'- aGAUgCGGU--------GUcaGGUUGUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 127691 0.66 0.997053
Target:  5'- aCUAcCGCUuuACAGUUgGugGCACUGuaGCGCa -3'
miRNA:   3'- aGAU-GCGG--UGUCAGgU--UGUGAU--UGCG- -5'
2693 3' -49.8 NC_001491.2 + 39904 0.66 0.996518
Target:  5'- cUCgacgGCGCCgACGGUaUCG--GCUAGCGCg -3'
miRNA:   3'- -AGa---UGCGG-UGUCA-GGUugUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 91704 0.66 0.996518
Target:  5'- gUCUGCGCCucuaucgcuaGCAcggcGUCCcuGACGCUGGC-Ca -3'
miRNA:   3'- -AGAUGCGG----------UGU----CAGG--UUGUGAUUGcG- -5'
2693 3' -49.8 NC_001491.2 + 7614 0.66 0.996343
Target:  5'- --cGCGCCACGcuagagucucuucuGUCgAGCGCcAACGUg -3'
miRNA:   3'- agaUGCGGUGU--------------CAGgUUGUGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 141676 0.66 0.995907
Target:  5'- --cACGCUcCAG-CCAGCGCaucGACGCc -3'
miRNA:   3'- agaUGCGGuGUCaGGUUGUGa--UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 143192 0.67 0.99521
Target:  5'- -aUGCGCCuucauACAcGUCCG-CACgagGGCGCc -3'
miRNA:   3'- agAUGCGG-----UGU-CAGGUuGUGa--UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 43681 0.67 0.99521
Target:  5'- cUCUcAUGCUGgGGUCgAGCACUAuaagacacggcgGCGCu -3'
miRNA:   3'- -AGA-UGCGGUgUCAGgUUGUGAU------------UGCG- -5'
2693 3' -49.8 NC_001491.2 + 121677 0.67 0.99521
Target:  5'- aUCgggGCGCCACGGcggGGCGCagAACGCc -3'
miRNA:   3'- -AGa--UGCGGUGUCaggUUGUGa-UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 100889 0.67 0.99442
Target:  5'- --gGCGCCA-AGUCCGGCGCgggagGACu- -3'
miRNA:   3'- agaUGCGGUgUCAGGUUGUGa----UUGcg -5'
2693 3' -49.8 NC_001491.2 + 53262 0.67 0.99442
Target:  5'- --gACGCCGCAGgaUCUGGCGCUAcuucugaaaACGg -3'
miRNA:   3'- agaUGCGGUGUC--AGGUUGUGAU---------UGCg -5'
2693 3' -49.8 NC_001491.2 + 122229 0.67 0.99442
Target:  5'- cUUGCGgCGCuuuuuGg-CAGCGCUAGCGCg -3'
miRNA:   3'- aGAUGCgGUGu----CagGUUGUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 50332 0.67 0.99442
Target:  5'- --cACGCCGCAGUcgCCGGCgaGCggcuCGCu -3'
miRNA:   3'- agaUGCGGUGUCA--GGUUG--UGauu-GCG- -5'
2693 3' -49.8 NC_001491.2 + 97953 0.67 0.993528
Target:  5'- --aGCGCCAUGGcagcuaaacCCGACACUGACu- -3'
miRNA:   3'- agaUGCGGUGUCa--------GGUUGUGAUUGcg -5'
2693 3' -49.8 NC_001491.2 + 42586 0.67 0.99294
Target:  5'- --gGCGCCAUAuucccgaguuaggguGguagCCAGCACUGcCGCg -3'
miRNA:   3'- agaUGCGGUGU---------------Ca---GGUUGUGAUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.