miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2693 3' -49.8 NC_001491.2 + 137253 0.67 0.991402
Target:  5'- gUCUGCGCUugcccCGGUCCGAgcaGCggAGCGUu -3'
miRNA:   3'- -AGAUGCGGu----GUCAGGUUg--UGa-UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 6561 0.67 0.991402
Target:  5'- cUCUGCGagCACAGcgCCGcC-CUGGCGCu -3'
miRNA:   3'- -AGAUGCg-GUGUCa-GGUuGuGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 140148 0.68 0.99015
Target:  5'- aCUuuGCCGCGGUCguGCGCgc-CGUg -3'
miRNA:   3'- aGAugCGGUGUCAGguUGUGauuGCG- -5'
2693 3' -49.8 NC_001491.2 + 140183 0.68 0.99015
Target:  5'- --gGCGCaCGCGGUCU--CGCUGccGCGCu -3'
miRNA:   3'- agaUGCG-GUGUCAGGuuGUGAU--UGCG- -5'
2693 3' -49.8 NC_001491.2 + 36937 0.68 0.99015
Target:  5'- gCUACcgGCCACAGUCCAggcccGCcCUucGACGa -3'
miRNA:   3'- aGAUG--CGGUGUCAGGU-----UGuGA--UUGCg -5'
2693 3' -49.8 NC_001491.2 + 87587 0.68 0.988759
Target:  5'- gCUGCGCCuCAGgCCAGuCA--AACGCa -3'
miRNA:   3'- aGAUGCGGuGUCaGGUU-GUgaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 61479 0.68 0.988314
Target:  5'- -gUGCGCCGCuggAGUCCGgguagguacgaucuGCGCgcaggaGGCGCa -3'
miRNA:   3'- agAUGCGGUG---UCAGGU--------------UGUGa-----UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 118628 0.68 0.98722
Target:  5'- --cACGCCAUGG-CCAGC-C-AGCGCa -3'
miRNA:   3'- agaUGCGGUGUCaGGUUGuGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 80516 0.69 0.97698
Target:  5'- gUCcgGCGCgGCGGUugCCAGCACgggaguaguGCGCu -3'
miRNA:   3'- -AGa-UGCGgUGUCA--GGUUGUGau-------UGCG- -5'
2693 3' -49.8 NC_001491.2 + 70950 0.69 0.97698
Target:  5'- --gACuCCACGGUUgCAgcACACUGGCGCg -3'
miRNA:   3'- agaUGcGGUGUCAG-GU--UGUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 54666 0.7 0.965206
Target:  5'- aCUGCGCgCACAGcUCGGCuuugAGCGCg -3'
miRNA:   3'- aGAUGCG-GUGUCaGGUUGuga-UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 114586 0.71 0.947075
Target:  5'- gCUGCGCCccguguaccucgccuGCGG-CCGGCGC-GGCGCu -3'
miRNA:   3'- aGAUGCGG---------------UGUCaGGUUGUGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 115078 0.71 0.94525
Target:  5'- cCUGCGCCugGGcUCCGcCA--GGCGCa -3'
miRNA:   3'- aGAUGCGGugUC-AGGUuGUgaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 97363 0.71 0.94051
Target:  5'- ----aGCCGCGGUCUgcgcGGCGCUGgcaACGCg -3'
miRNA:   3'- agaugCGGUGUCAGG----UUGUGAU---UGCG- -5'
2693 3' -49.8 NC_001491.2 + 40120 0.71 0.935512
Target:  5'- uUCUGCcGCCGCAGacaCgGACGCUGcgacugcccgcuGCGCa -3'
miRNA:   3'- -AGAUG-CGGUGUCa--GgUUGUGAU------------UGCG- -5'
2693 3' -49.8 NC_001491.2 + 79344 0.71 0.930255
Target:  5'- --aGCGCCuccGCGGUCCAGCGggGucGCGCu -3'
miRNA:   3'- agaUGCGG---UGUCAGGUUGUgaU--UGCG- -5'
2693 3' -49.8 NC_001491.2 + 69246 0.72 0.906635
Target:  5'- aCUAacgcaGCCGCGGUCCAucagccggugGCugUAuCGCa -3'
miRNA:   3'- aGAUg----CGGUGUCAGGU----------UGugAUuGCG- -5'
2693 3' -49.8 NC_001491.2 + 143115 0.73 0.878946
Target:  5'- uUCgugGCGCCAUguAGUCCAuuaACAUgUGACGCc -3'
miRNA:   3'- -AGa--UGCGGUG--UCAGGU---UGUG-AUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 146853 0.73 0.871414
Target:  5'- --gGCGCCACGGUCCGGgcCACcaccagaacGGCGCg -3'
miRNA:   3'- agaUGCGGUGUCAGGUU--GUGa--------UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 5595 0.74 0.830394
Target:  5'- -aUGCGCCugGG-CCAACGCgGAgGCg -3'
miRNA:   3'- agAUGCGGugUCaGGUUGUGaUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.