miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2693 3' -49.8 NC_001491.2 + 5595 0.74 0.830394
Target:  5'- -aUGCGCCugGG-CCAACGCgGAgGCg -3'
miRNA:   3'- agAUGCGGugUCaGGUUGUGaUUgCG- -5'
2693 3' -49.8 NC_001491.2 + 6561 0.67 0.991402
Target:  5'- cUCUGCGagCACAGcgCCGcC-CUGGCGCu -3'
miRNA:   3'- -AGAUGCg-GUGUCa-GGUuGuGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 7614 0.66 0.996343
Target:  5'- --cGCGCCACGcuagagucucuucuGUCgAGCGCcAACGUg -3'
miRNA:   3'- agaUGCGGUGU--------------CAGgUUGUGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 19250 0.66 0.997517
Target:  5'- uUCUccACGCCACcaucgAG-CCAACAC--ACGUa -3'
miRNA:   3'- -AGA--UGCGGUG-----UCaGGUUGUGauUGCG- -5'
2693 3' -49.8 NC_001491.2 + 36937 0.68 0.99015
Target:  5'- gCUACcgGCCACAGUCCAggcccGCcCUucGACGa -3'
miRNA:   3'- aGAUG--CGGUGUCAGGU-----UGuGA--UUGCg -5'
2693 3' -49.8 NC_001491.2 + 39904 0.66 0.996518
Target:  5'- cUCgacgGCGCCgACGGUaUCG--GCUAGCGCg -3'
miRNA:   3'- -AGa---UGCGG-UGUCA-GGUugUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 40120 0.71 0.935512
Target:  5'- uUCUGCcGCCGCAGacaCgGACGCUGcgacugcccgcuGCGCa -3'
miRNA:   3'- -AGAUG-CGGUGUCa--GgUUGUGAU------------UGCG- -5'
2693 3' -49.8 NC_001491.2 + 42586 0.67 0.99294
Target:  5'- --gGCGCCAUAuucccgaguuaggguGguagCCAGCACUGcCGCg -3'
miRNA:   3'- agaUGCGGUGU---------------Ca---GGUUGUGAUuGCG- -5'
2693 3' -49.8 NC_001491.2 + 43681 0.67 0.99521
Target:  5'- cUCUcAUGCUGgGGUCgAGCACUAuaagacacggcgGCGCu -3'
miRNA:   3'- -AGA-UGCGGUgUCAGgUUGUGAU------------UGCG- -5'
2693 3' -49.8 NC_001491.2 + 44599 0.76 0.755096
Target:  5'- ---uUGCCACuGUCCGAUugUGugGCg -3'
miRNA:   3'- agauGCGGUGuCAGGUUGugAUugCG- -5'
2693 3' -49.8 NC_001491.2 + 50332 0.67 0.99442
Target:  5'- --cACGCCGCAGUcgCCGGCgaGCggcuCGCu -3'
miRNA:   3'- agaUGCGGUGUCA--GGUUG--UGauu-GCG- -5'
2693 3' -49.8 NC_001491.2 + 53262 0.67 0.99442
Target:  5'- --gACGCCGCAGgaUCUGGCGCUAcuucugaaaACGg -3'
miRNA:   3'- agaUGCGGUGUC--AGGUUGUGAU---------UGCg -5'
2693 3' -49.8 NC_001491.2 + 54666 0.7 0.965206
Target:  5'- aCUGCGCgCACAGcUCGGCuuugAGCGCg -3'
miRNA:   3'- aGAUGCG-GUGUCaGGUUGuga-UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 57201 0.66 0.997517
Target:  5'- --cACGUCACAGUCacuAUAC--GCGCu -3'
miRNA:   3'- agaUGCGGUGUCAGgu-UGUGauUGCG- -5'
2693 3' -49.8 NC_001491.2 + 61479 0.68 0.988314
Target:  5'- -gUGCGCCGCuggAGUCCGgguagguacgaucuGCGCgcaggaGGCGCa -3'
miRNA:   3'- agAUGCGGUG---UCAGGU--------------UGUGa-----UUGCG- -5'
2693 3' -49.8 NC_001491.2 + 69246 0.72 0.906635
Target:  5'- aCUAacgcaGCCGCGGUCCAucagccggugGCugUAuCGCa -3'
miRNA:   3'- aGAUg----CGGUGUCAGGU----------UGugAUuGCG- -5'
2693 3' -49.8 NC_001491.2 + 70950 0.69 0.97698
Target:  5'- --gACuCCACGGUUgCAgcACACUGGCGCg -3'
miRNA:   3'- agaUGcGGUGUCAG-GU--UGUGAUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 77694 0.66 0.997517
Target:  5'- cUCcGCGCUAacuGGcCUAGCGCUAaugGCGCg -3'
miRNA:   3'- -AGaUGCGGUg--UCaGGUUGUGAU---UGCG- -5'
2693 3' -49.8 NC_001491.2 + 78447 0.66 0.997517
Target:  5'- aCU-CGCCGCuugagcucugAGaCCAGCAC-GGCGCg -3'
miRNA:   3'- aGAuGCGGUG----------UCaGGUUGUGaUUGCG- -5'
2693 3' -49.8 NC_001491.2 + 79344 0.71 0.930255
Target:  5'- --aGCGCCuccGCGGUCCAGCGggGucGCGCu -3'
miRNA:   3'- agaUGCGG---UGUCAGGUUGUgaU--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.