Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2693 | 3' | -49.8 | NC_001491.2 | + | 105344 | 1.12 | 0.007151 |
Target: 5'- cUCUACGCCACAGUCCAACACUAACGCc -3' miRNA: 3'- -AGAUGCGGUGUCAGGUUGUGAUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 43681 | 0.67 | 0.99521 |
Target: 5'- cUCUcAUGCUGgGGUCgAGCACUAuaagacacggcgGCGCu -3' miRNA: 3'- -AGA-UGCGGUgUCAGgUUGUGAU------------UGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 121677 | 0.67 | 0.99521 |
Target: 5'- aUCgggGCGCCACGGcggGGCGCagAACGCc -3' miRNA: 3'- -AGa--UGCGGUGUCaggUUGUGa-UUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 50332 | 0.67 | 0.99442 |
Target: 5'- --cACGCCGCAGUcgCCGGCgaGCggcuCGCu -3' miRNA: 3'- agaUGCGGUGUCA--GGUUG--UGauu-GCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 122229 | 0.67 | 0.99442 |
Target: 5'- cUUGCGgCGCuuuuuGg-CAGCGCUAGCGCg -3' miRNA: 3'- aGAUGCgGUGu----CagGUUGUGAUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 53262 | 0.67 | 0.99442 |
Target: 5'- --gACGCCGCAGgaUCUGGCGCUAcuucugaaaACGg -3' miRNA: 3'- agaUGCGGUGUC--AGGUUGUGAU---------UGCg -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 100889 | 0.67 | 0.99442 |
Target: 5'- --gGCGCCA-AGUCCGGCGCgggagGACu- -3' miRNA: 3'- agaUGCGGUgUCAGGUUGUGa----UUGcg -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 97953 | 0.67 | 0.993528 |
Target: 5'- --aGCGCCAUGGcagcuaaacCCGACACUGACu- -3' miRNA: 3'- agaUGCGGUGUCa--------GGUUGUGAUUGcg -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 42586 | 0.67 | 0.99294 |
Target: 5'- --gGCGCCAUAuucccgaguuaggguGguagCCAGCACUGcCGCg -3' miRNA: 3'- agaUGCGGUGU---------------Ca---GGUUGUGAUuGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 143192 | 0.67 | 0.99521 |
Target: 5'- -aUGCGCCuucauACAcGUCCG-CACgagGGCGCc -3' miRNA: 3'- agAUGCGG-----UGU-CAGGUuGUGa--UUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 141676 | 0.66 | 0.995907 |
Target: 5'- --cACGCUcCAG-CCAGCGCaucGACGCc -3' miRNA: 3'- agaUGCGGuGUCaGGUUGUGa--UUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 7614 | 0.66 | 0.996343 |
Target: 5'- --cGCGCCACGcuagagucucuucuGUCgAGCGCcAACGUg -3' miRNA: 3'- agaUGCGGUGU--------------CAGgUUGUGaUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 57201 | 0.66 | 0.997517 |
Target: 5'- --cACGUCACAGUCacuAUAC--GCGCu -3' miRNA: 3'- agaUGCGGUGUCAGgu-UGUGauUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 77694 | 0.66 | 0.997517 |
Target: 5'- cUCcGCGCUAacuGGcCUAGCGCUAaugGCGCg -3' miRNA: 3'- -AGaUGCGGUg--UCaGGUUGUGAU---UGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 78447 | 0.66 | 0.997517 |
Target: 5'- aCU-CGCCGCuugagcucugAGaCCAGCAC-GGCGCg -3' miRNA: 3'- aGAuGCGGUG----------UCaGGUUGUGaUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 121862 | 0.66 | 0.997517 |
Target: 5'- cUCUGCucgggcagcaGCUGCAGgagggacugCCAGCACUcgaguguggGGCGCg -3' miRNA: 3'- -AGAUG----------CGGUGUCa--------GGUUGUGA---------UUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 127691 | 0.66 | 0.997053 |
Target: 5'- aCUAcCGCUuuACAGUUgGugGCACUGuaGCGCa -3' miRNA: 3'- aGAU-GCGG--UGUCAGgU--UGUGAU--UGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 132684 | 0.66 | 0.997053 |
Target: 5'- aCUAgGCCGgcgauaccCAaaCCGACGCUGAUGCc -3' miRNA: 3'- aGAUgCGGU--------GUcaGGUUGUGAUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 39904 | 0.66 | 0.996518 |
Target: 5'- cUCgacgGCGCCgACGGUaUCG--GCUAGCGCg -3' miRNA: 3'- -AGa---UGCGG-UGUCA-GGUugUGAUUGCG- -5' |
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2693 | 3' | -49.8 | NC_001491.2 | + | 91704 | 0.66 | 0.996518 |
Target: 5'- gUCUGCGCCucuaucgcuaGCAcggcGUCCcuGACGCUGGC-Ca -3' miRNA: 3'- -AGAUGCGG----------UGU----CAGG--UUGUGAUUGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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