miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2693 5' -55 NC_001491.2 + 147167 0.66 0.929913
Target:  5'- cGGCGCCuccgccgcucugggaGUGCUGGGgggaCugGGAGUg- -3'
miRNA:   3'- uCCGCGG---------------CACGACUUa---GugCUUCGac -5'
2693 5' -55 NC_001491.2 + 116521 0.66 0.916553
Target:  5'- gAGGCGCUGUGCUccaaCcCGGccgGGCUGg -3'
miRNA:   3'- -UCCGCGGCACGAcuuaGuGCU---UCGAC- -5'
2693 5' -55 NC_001491.2 + 139944 0.66 0.916553
Target:  5'- cGGCGCCgGUGgaGAccCACGccGAGCUc -3'
miRNA:   3'- uCCGCGG-CACgaCUuaGUGC--UUCGAc -5'
2693 5' -55 NC_001491.2 + 81692 0.66 0.910567
Target:  5'- cGGUGUuagaCGUGCUGGGg-GCGAcGCUGg -3'
miRNA:   3'- uCCGCG----GCACGACUUagUGCUuCGAC- -5'
2693 5' -55 NC_001491.2 + 85535 0.66 0.9037
Target:  5'- uGGGgGCCGcUGUUaacaaaucugccaGAAUCugGggGCUc -3'
miRNA:   3'- -UCCgCGGC-ACGA-------------CUUAGugCuuCGAc -5'
2693 5' -55 NC_001491.2 + 123260 0.68 0.837869
Target:  5'- cGGCGCCGcGCcGAGaucCACGAGGUa- -3'
miRNA:   3'- uCCGCGGCaCGaCUUa--GUGCUUCGac -5'
2693 5' -55 NC_001491.2 + 30866 0.68 0.828574
Target:  5'- uGGCGCgCGUGUUGGucaGCGGggaaguaGGCUGg -3'
miRNA:   3'- uCCGCG-GCACGACUuagUGCU-------UCGAC- -5'
2693 5' -55 NC_001491.2 + 32175 0.68 0.820802
Target:  5'- cGGCG-UGUGCguuucuggaugUGGAUCACG-AGCUGa -3'
miRNA:   3'- uCCGCgGCACG-----------ACUUAGUGCuUCGAC- -5'
2693 5' -55 NC_001491.2 + 120177 0.7 0.716196
Target:  5'- gGGGCGCCGUGUUacGUCgAUGggGUg- -3'
miRNA:   3'- -UCCGCGGCACGAcuUAG-UGCuuCGac -5'
2693 5' -55 NC_001491.2 + 145419 0.72 0.654526
Target:  5'- cGGGCGCCGaaGCUGGAgC-CGGAGCg- -3'
miRNA:   3'- -UCCGCGGCa-CGACUUaGuGCUUCGac -5'
2693 5' -55 NC_001491.2 + 121386 0.72 0.633725
Target:  5'- gGGGuCGCCGgagcuggGCUGGgccgggGUCGcCGGAGCUGg -3'
miRNA:   3'- -UCC-GCGGCa------CGACU------UAGU-GCUUCGAC- -5'
2693 5' -55 NC_001491.2 + 105311 1.08 0.003807
Target:  5'- gAGGCGCCGUGCUGAAUCACGAAGCUGc -3'
miRNA:   3'- -UCCGCGGCACGACUUAGUGCUUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.