Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2693 | 5' | -55 | NC_001491.2 | + | 147167 | 0.66 | 0.929913 |
Target: 5'- cGGCGCCuccgccgcucugggaGUGCUGGGgggaCugGGAGUg- -3' miRNA: 3'- uCCGCGG---------------CACGACUUa---GugCUUCGac -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 121386 | 0.72 | 0.633725 |
Target: 5'- gGGGuCGCCGgagcuggGCUGGgccgggGUCGcCGGAGCUGg -3' miRNA: 3'- -UCC-GCGGCa------CGACU------UAGU-GCUUCGAC- -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 145419 | 0.72 | 0.654526 |
Target: 5'- cGGGCGCCGaaGCUGGAgC-CGGAGCg- -3' miRNA: 3'- -UCCGCGGCa-CGACUUaGuGCUUCGac -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 120177 | 0.7 | 0.716196 |
Target: 5'- gGGGCGCCGUGUUacGUCgAUGggGUg- -3' miRNA: 3'- -UCCGCGGCACGAcuUAG-UGCuuCGac -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 32175 | 0.68 | 0.820802 |
Target: 5'- cGGCG-UGUGCguuucuggaugUGGAUCACG-AGCUGa -3' miRNA: 3'- uCCGCgGCACG-----------ACUUAGUGCuUCGAC- -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 30866 | 0.68 | 0.828574 |
Target: 5'- uGGCGCgCGUGUUGGucaGCGGggaaguaGGCUGg -3' miRNA: 3'- uCCGCG-GCACGACUuagUGCU-------UCGAC- -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 123260 | 0.68 | 0.837869 |
Target: 5'- cGGCGCCGcGCcGAGaucCACGAGGUa- -3' miRNA: 3'- uCCGCGGCaCGaCUUa--GUGCUUCGac -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 85535 | 0.66 | 0.9037 |
Target: 5'- uGGGgGCCGcUGUUaacaaaucugccaGAAUCugGggGCUc -3' miRNA: 3'- -UCCgCGGC-ACGA-------------CUUAGugCuuCGAc -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 81692 | 0.66 | 0.910567 |
Target: 5'- cGGUGUuagaCGUGCUGGGg-GCGAcGCUGg -3' miRNA: 3'- uCCGCG----GCACGACUUagUGCUuCGAC- -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 139944 | 0.66 | 0.916553 |
Target: 5'- cGGCGCCgGUGgaGAccCACGccGAGCUc -3' miRNA: 3'- uCCGCGG-CACgaCUuaGUGC--UUCGAc -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 116521 | 0.66 | 0.916553 |
Target: 5'- gAGGCGCUGUGCUccaaCcCGGccgGGCUGg -3' miRNA: 3'- -UCCGCGGCACGAcuuaGuGCU---UCGAC- -5' |
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2693 | 5' | -55 | NC_001491.2 | + | 105311 | 1.08 | 0.003807 |
Target: 5'- gAGGCGCCGUGCUGAAUCACGAAGCUGc -3' miRNA: 3'- -UCCGCGGCACGACUUAGUGCUUCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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