miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26932 5' -55 NC_005809.1 + 15267 1.12 0.000433
Target:  5'- gCACAAACAGUUGCCCGCUGUCGCCCCa -3'
miRNA:   3'- -GUGUUUGUCAACGGGCGACAGCGGGG- -5'
26932 5' -55 NC_005809.1 + 33558 0.76 0.179227
Target:  5'- gACGAACuGGUgcgccGCCUGCUGgaagCGCCCCc -3'
miRNA:   3'- gUGUUUG-UCAa----CGGGCGACa---GCGGGG- -5'
26932 5' -55 NC_005809.1 + 32859 0.75 0.217062
Target:  5'- cCGCAGACGGUcgGCgCCGagauUGUCGCgCCCg -3'
miRNA:   3'- -GUGUUUGUCAa-CG-GGCg---ACAGCG-GGG- -5'
26932 5' -55 NC_005809.1 + 11135 0.72 0.297641
Target:  5'- uGCGAGCAGUucgGCCUGCUGcugggcCGCCUg -3'
miRNA:   3'- gUGUUUGUCAa--CGGGCGACa-----GCGGGg -5'
26932 5' -55 NC_005809.1 + 32844 0.71 0.354502
Target:  5'- cCACGAGCAGUUcGCCCGCg---GCUUCg -3'
miRNA:   3'- -GUGUUUGUCAA-CGGGCGacagCGGGG- -5'
26932 5' -55 NC_005809.1 + 17563 0.71 0.363225
Target:  5'- -uCGGACGGcaaCCCGCUGUCgucgGCCCCc -3'
miRNA:   3'- guGUUUGUCaacGGGCGACAG----CGGGG- -5'
26932 5' -55 NC_005809.1 + 31608 0.69 0.458257
Target:  5'- aACAGguggccGCAGUgucCCCgGCUGUCGCCgCg -3'
miRNA:   3'- gUGUU------UGUCAac-GGG-CGACAGCGGgG- -5'
26932 5' -55 NC_005809.1 + 31028 0.69 0.489271
Target:  5'- gGCGGGCAGUccuaucaggaUGCCCGCUcgcaggGCCUCa -3'
miRNA:   3'- gUGUUUGUCA----------ACGGGCGAcag---CGGGG- -5'
26932 5' -55 NC_005809.1 + 18476 0.68 0.499826
Target:  5'- gCGCAuguAGCGGggUGCCCGUgccccgcgcgGUCGCCgCu -3'
miRNA:   3'- -GUGU---UUGUCa-ACGGGCGa---------CAGCGGgG- -5'
26932 5' -55 NC_005809.1 + 34265 0.68 0.521231
Target:  5'- -cCGAGCAGcgcGCaCCGCUGgcugcacUGCCCCg -3'
miRNA:   3'- guGUUUGUCaa-CG-GGCGACa------GCGGGG- -5'
26932 5' -55 NC_005809.1 + 16788 0.68 0.542983
Target:  5'- gGCGAuggucgcCAGUUGCCaGUUgGUCGCgCCCa -3'
miRNA:   3'- gUGUUu------GUCAACGGgCGA-CAGCG-GGG- -5'
26932 5' -55 NC_005809.1 + 41730 0.68 0.54737
Target:  5'- aUACAGgccACGGUcgGCUCGCUGUCucugcgcgcgcucaaGCCCa -3'
miRNA:   3'- -GUGUU---UGUCAa-CGGGCGACAG---------------CGGGg -5'
26932 5' -55 NC_005809.1 + 9517 0.68 0.553972
Target:  5'- gGCGAACAGUgGCaucaUGCUG-CGgCCCu -3'
miRNA:   3'- gUGUUUGUCAaCGg---GCGACaGCgGGG- -5'
26932 5' -55 NC_005809.1 + 17834 0.67 0.585059
Target:  5'- -uCGGGCGGguugaUGCCCGCcaccguggccucGUCGCCCa -3'
miRNA:   3'- guGUUUGUCa----ACGGGCGa-----------CAGCGGGg -5'
26932 5' -55 NC_005809.1 + 13167 0.67 0.587295
Target:  5'- -uCGGcCAGUgucgGCCgCGCUGggCGCCCUu -3'
miRNA:   3'- guGUUuGUCAa---CGG-GCGACa-GCGGGG- -5'
26932 5' -55 NC_005809.1 + 3660 0.67 0.587295
Target:  5'- cCACAAGCAaccGgacGCCUGCacaaCGCCCCa -3'
miRNA:   3'- -GUGUUUGU---Caa-CGGGCGaca-GCGGGG- -5'
26932 5' -55 NC_005809.1 + 35374 0.67 0.598493
Target:  5'- aCGCAguccGAUGGcaaGCCCaGC-GUCGCCCCc -3'
miRNA:   3'- -GUGU----UUGUCaa-CGGG-CGaCAGCGGGG- -5'
26932 5' -55 NC_005809.1 + 163 0.67 0.598493
Target:  5'- cCGCAGGCGGaUGCgccCCGgUGUCGCUg- -3'
miRNA:   3'- -GUGUUUGUCaACG---GGCgACAGCGGgg -5'
26932 5' -55 NC_005809.1 + 27150 0.67 0.609721
Target:  5'- aACAAGCuguGGUUGCgCGUgcaucgGUCGUCCg -3'
miRNA:   3'- gUGUUUG---UCAACGgGCGa-----CAGCGGGg -5'
26932 5' -55 NC_005809.1 + 15562 0.66 0.620969
Target:  5'- uCACGGuACAuauccGCgCCGCUGUaGCCCCa -3'
miRNA:   3'- -GUGUU-UGUcaa--CG-GGCGACAgCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.