Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26933 | 3' | -56 | NC_005809.1 | + | 12612 | 0.66 | 0.56701 |
Target: 5'- aGGCCGucGUGCGC-CGCGACgACAaGCa- -3' miRNA: 3'- -CUGGC--UACGUGcGCGUUGgUGU-CGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 31483 | 0.66 | 0.565888 |
Target: 5'- aGCCGAcaaggUGCucGCGCGCGACCcggacacguucgaGCAGUUc -3' miRNA: 3'- cUGGCU-----ACG--UGCGCGUUGG-------------UGUCGAa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 26250 | 0.66 | 0.555818 |
Target: 5'- cGCCGAagGCACGgGCAcCCGcCGGCc- -3' miRNA: 3'- cUGGCUa-CGUGCgCGUuGGU-GUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 15441 | 0.66 | 0.555818 |
Target: 5'- cGAgUGAUGCGCGCG--GCguCAGCUUu -3' miRNA: 3'- -CUgGCUACGUGCGCguUGguGUCGAA- -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 38811 | 0.66 | 0.555818 |
Target: 5'- cGACCGAgGCuACGUcCAGCgGCGGCa- -3' miRNA: 3'- -CUGGCUaCG-UGCGcGUUGgUGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 5392 | 0.66 | 0.552472 |
Target: 5'- cACUGGUGCGCGCcgcgagcaccuucuGCGuacgcuCCACGGCg- -3' miRNA: 3'- cUGGCUACGUGCG--------------CGUu-----GGUGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 32921 | 0.66 | 0.549133 |
Target: 5'- cGGCC--UGCACgGCugcuguucggccaggGCGACCACGGCUg -3' miRNA: 3'- -CUGGcuACGUG-CG---------------CGUUGGUGUCGAa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 19120 | 0.66 | 0.54469 |
Target: 5'- cGCCGGcgUGUACGCGCgAACCAUccGCa- -3' miRNA: 3'- cUGGCU--ACGUGCGCG-UUGGUGu-CGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 18026 | 0.66 | 0.54469 |
Target: 5'- cAUCGccGCGCuGCGCGACCAC-GCg- -3' miRNA: 3'- cUGGCuaCGUG-CGCGUUGGUGuCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 14877 | 0.66 | 0.541366 |
Target: 5'- aGCCGcUGCcgGCGCGCGgccuguauuccaagACCACGGUg- -3' miRNA: 3'- cUGGCuACG--UGCGCGU--------------UGGUGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 23400 | 0.66 | 0.533636 |
Target: 5'- cGCCGGcgGCACGgGCAGCgACAacGCa- -3' miRNA: 3'- cUGGCUa-CGUGCgCGUUGgUGU--CGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 31404 | 0.66 | 0.533636 |
Target: 5'- cGGCCGAccagcGCACGCaacgugcgcagGCGGCCcaGCAGCa- -3' miRNA: 3'- -CUGGCUa----CGUGCG-----------CGUUGG--UGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 14745 | 0.66 | 0.525947 |
Target: 5'- cGGCCGGcgccaccgcgggcaGCGCGCGCGaggacguGCUGCGGCUg -3' miRNA: 3'- -CUGGCUa-------------CGUGCGCGU-------UGGUGUCGAa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 391 | 0.66 | 0.522664 |
Target: 5'- uGAgCGcgGCcaGCGCGCGACUguugaGCAGCa- -3' miRNA: 3'- -CUgGCuaCG--UGCGCGUUGG-----UGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 3740 | 0.66 | 0.522664 |
Target: 5'- cGCCGGUgguggGCACGuCGguGCCGCcGCUg -3' miRNA: 3'- cUGGCUA-----CGUGC-GCguUGGUGuCGAa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 34470 | 0.66 | 0.522664 |
Target: 5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3' miRNA: 3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 34518 | 0.66 | 0.511779 |
Target: 5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3' miRNA: 3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 8296 | 0.66 | 0.511779 |
Target: 5'- uGCCGggGCA-GUGCAGCCAgCGGUg- -3' miRNA: 3'- cUGGCuaCGUgCGCGUUGGU-GUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 9756 | 0.66 | 0.508531 |
Target: 5'- cGGCUGGUGUaguccgaccggcagACGCGCAGCaC-CAGCg- -3' miRNA: 3'- -CUGGCUACG--------------UGCGCGUUG-GuGUCGaa -5' |
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26933 | 3' | -56 | NC_005809.1 | + | 32702 | 0.67 | 0.500989 |
Target: 5'- uGGCCGAgaaGCAgCGCGCcgguGCCAC-GCUc -3' miRNA: 3'- -CUGGCUa--CGU-GCGCGu---UGGUGuCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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