Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26936 | 3' | -50.3 | NC_005809.1 | + | 22261 | 0.66 | 0.888194 |
Target: 5'- ---cAGCCCGCAUCgCAAC-CGGcCGCc -3' miRNA: 3'- uuuaUUGGGCGUGG-GUUGaGCUaGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 32058 | 0.66 | 0.880206 |
Target: 5'- -cGUGGCCgGCGgUCAGCaguUCGAUCAa -3' miRNA: 3'- uuUAUUGGgCGUgGGUUG---AGCUAGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 28489 | 0.66 | 0.863361 |
Target: 5'- cGAgcAUCCGCucggcauuGCCgAACUCGGUCAUc -3' miRNA: 3'- uUUauUGGGCG--------UGGgUUGAGCUAGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 33757 | 0.66 | 0.863361 |
Target: 5'- --cUGGCCCG-ACCCAGCa-GAUCGg -3' miRNA: 3'- uuuAUUGGGCgUGGGUUGagCUAGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 41014 | 0.66 | 0.863361 |
Target: 5'- aGGAUAugCC-CAUCCAGC-CGGUCGa -3' miRNA: 3'- -UUUAUugGGcGUGGGUUGaGCUAGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 42160 | 0.66 | 0.863361 |
Target: 5'- -cGUGGCCCGCgacgugcuGCUCAACagUCGcgCGCu -3' miRNA: 3'- uuUAUUGGGCG--------UGGGUUG--AGCuaGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 10861 | 0.66 | 0.845413 |
Target: 5'- ---aAGCCCGCGCgCGGCgggcUGGUCAg -3' miRNA: 3'- uuuaUUGGGCGUGgGUUGa---GCUAGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 3079 | 0.66 | 0.845413 |
Target: 5'- ---cGAgCCGCACCCAugcccUUCGA-CACg -3' miRNA: 3'- uuuaUUgGGCGUGGGUu----GAGCUaGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 41700 | 0.66 | 0.845413 |
Target: 5'- --cUGGCCCuGCugUuCAACUCGGcUCGCa -3' miRNA: 3'- uuuAUUGGG-CGugG-GUUGAGCU-AGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 18541 | 0.67 | 0.806534 |
Target: 5'- --uUGGCCUG-GCCgAAgUCGAUCACg -3' miRNA: 3'- uuuAUUGGGCgUGGgUUgAGCUAGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 33698 | 0.67 | 0.806534 |
Target: 5'- cAAUGauGCCCGCGCCCGcUUCG-UgGCg -3' miRNA: 3'- uUUAU--UGGGCGUGGGUuGAGCuAgUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 18135 | 0.68 | 0.775139 |
Target: 5'- ---gAACuuGuCGCCCGGCUCGcgCAg -3' miRNA: 3'- uuuaUUGggC-GUGGGUUGAGCuaGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 11368 | 0.68 | 0.764318 |
Target: 5'- ---cGACCUGCucGCCCGGCaccUCGGUgGCg -3' miRNA: 3'- uuuaUUGGGCG--UGGGUUG---AGCUAgUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 25557 | 0.68 | 0.753341 |
Target: 5'- -----uCCCGUucACCU-ACUCGGUCACg -3' miRNA: 3'- uuuauuGGGCG--UGGGuUGAGCUAGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 7465 | 0.69 | 0.730977 |
Target: 5'- cGAAUGGCCuUGCACCagGACUCGAcCAg -3' miRNA: 3'- -UUUAUUGG-GCGUGGg-UUGAGCUaGUg -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 5027 | 0.69 | 0.708161 |
Target: 5'- ---cAGCgCCGCgauGCCCcGCUCGAUgGCg -3' miRNA: 3'- uuuaUUG-GGCG---UGGGuUGAGCUAgUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 32609 | 0.69 | 0.70701 |
Target: 5'- --cUGGCCCGCgucaaggGCCgCGACgccgCGGUCGCu -3' miRNA: 3'- uuuAUUGGGCG-------UGG-GUUGa---GCUAGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 33840 | 0.7 | 0.661613 |
Target: 5'- cGGUAGCgCCGCGCCC-GC-CGggCACa -3' miRNA: 3'- uUUAUUG-GGCGUGGGuUGaGCuaGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 25264 | 0.7 | 0.638098 |
Target: 5'- ----uGCUCGCGCU--GCUCGGUCACu -3' miRNA: 3'- uuuauUGGGCGUGGguUGAGCUAGUG- -5' |
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26936 | 3' | -50.3 | NC_005809.1 | + | 20765 | 0.7 | 0.626325 |
Target: 5'- ----uGCgCCGCGCUCGACUC-AUCGCg -3' miRNA: 3'- uuuauUG-GGCGUGGGUUGAGcUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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