miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 37046 0.67 0.444427
Target:  5'- -gGGCG-GAACCuGGGCGgCCggCGUGu -3'
miRNA:   3'- ggCCGCgCUUGGuCCUGC-GGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 13033 0.67 0.444427
Target:  5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3'
miRNA:   3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5'
26939 3' -59.1 NC_005809.1 + 32120 0.67 0.444427
Target:  5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3'
miRNA:   3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 7057 0.67 0.441563
Target:  5'- aCCGGgGCG-GCCAGGuacuucaugACGCCgcggccuacccacggCGCGc -3'
miRNA:   3'- -GGCCgCGCuUGGUCC---------UGCGGaa-------------GCGC- -5'
26939 3' -59.1 NC_005809.1 + 24141 0.67 0.434921
Target:  5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5'
26939 3' -59.1 NC_005809.1 + 17691 0.67 0.434921
Target:  5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3'
miRNA:   3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 454 0.67 0.434921
Target:  5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3'
miRNA:   3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 41104 0.67 0.434921
Target:  5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3'
miRNA:   3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5'
26939 3' -59.1 NC_005809.1 + 20779 0.67 0.433977
Target:  5'- gCCGGUGUccgccaaGAACCAGGACaucagcaccguGCCgg-GCGg -3'
miRNA:   3'- -GGCCGCG-------CUUGGUCCUG-----------CGGaagCGC- -5'
26939 3' -59.1 NC_005809.1 + 3254 0.67 0.425534
Target:  5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3'
miRNA:   3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 40554 0.67 0.425534
Target:  5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3'
miRNA:   3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5'
26939 3' -59.1 NC_005809.1 + 17257 0.67 0.425534
Target:  5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3'
miRNA:   3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5'
26939 3' -59.1 NC_005809.1 + 19704 0.67 0.425534
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26939 3' -59.1 NC_005809.1 + 29392 0.67 0.425534
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26939 3' -59.1 NC_005809.1 + 27455 0.67 0.425534
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 9719 0.67 0.416269
Target:  5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3'
miRNA:   3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 40845 0.67 0.416269
Target:  5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3'
miRNA:   3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 1750 0.67 0.416269
Target:  5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3'
miRNA:   3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 9772 0.67 0.410769
Target:  5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3'
miRNA:   3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 23282 0.67 0.407127
Target:  5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3'
miRNA:   3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.