Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26939 | 5' | -55.6 | NC_005809.1 | + | 18128 | 1.11 | 0.000529 |
Target: 5'- gUACGUCGAACUUGUCGCCCGGCUCGCg -3' miRNA: 3'- -AUGCAGCUUGAACAGCGGGCCGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 11305 | 0.8 | 0.085193 |
Target: 5'- cACGUCGGggucaACgaauaucacGUCGCCCGGCUCGUa -3' miRNA: 3'- aUGCAGCU-----UGaa-------CAGCGGGCCGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 7687 | 0.75 | 0.18285 |
Target: 5'- -uCGUCGGGCUUGaccucggCGgCCGGCUUGCc -3' miRNA: 3'- auGCAGCUUGAACa------GCgGGCCGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 21303 | 0.75 | 0.18285 |
Target: 5'- gGCGUCGAACUUGUCGagcacuUCgGGCUUGa -3' miRNA: 3'- aUGCAGCUUGAACAGC------GGgCCGAGCg -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 25572 | 0.74 | 0.215126 |
Target: 5'- gGCGUCGGAgUUGUaCGCCgCGGUcUGCg -3' miRNA: 3'- aUGCAGCUUgAACA-GCGG-GCCGaGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 18004 | 0.72 | 0.286913 |
Target: 5'- -cCGcCGGACUUGUCGUCCGaacCUUGCg -3' miRNA: 3'- auGCaGCUUGAACAGCGGGCc--GAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 40325 | 0.71 | 0.350141 |
Target: 5'- cGCGUCGAACUgccgGcCaagGCCCGGCguuuauacCGCg -3' miRNA: 3'- aUGCAGCUUGAa---CaG---CGGGCCGa-------GCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 29621 | 0.7 | 0.376279 |
Target: 5'- aGCGcCGGgcGCUUGUgGCCgGGCUUGa -3' miRNA: 3'- aUGCaGCU--UGAACAgCGGgCCGAGCg -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 32973 | 0.7 | 0.394421 |
Target: 5'- aACGUCGAACUca-CGCCCgaGGUgCGCa -3' miRNA: 3'- aUGCAGCUUGAacaGCGGG--CCGaGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 21996 | 0.69 | 0.422672 |
Target: 5'- aGCGUgCGggUUUcGUcggCGCCUGGCUCGa -3' miRNA: 3'- aUGCA-GCuuGAA-CA---GCGGGCCGAGCg -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 14683 | 0.69 | 0.442167 |
Target: 5'- -gUGUUGAgcGCUUGaaGCCCGGCcUGCa -3' miRNA: 3'- auGCAGCU--UGAACagCGGGCCGaGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 15839 | 0.69 | 0.452103 |
Target: 5'- aGCGggCGcGCUggcgGUgGCCCGGCuUUGCa -3' miRNA: 3'- aUGCa-GCuUGAa---CAgCGGGCCG-AGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 6418 | 0.68 | 0.482619 |
Target: 5'- -uCGUCGAACUcGUC-CUCG-CUCGCg -3' miRNA: 3'- auGCAGCUUGAaCAGcGGGCcGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 12864 | 0.68 | 0.503505 |
Target: 5'- gUugGUC-AGCUUGUUguagaGCCacaGGCUCGUg -3' miRNA: 3'- -AugCAGcUUGAACAG-----CGGg--CCGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 27399 | 0.68 | 0.503505 |
Target: 5'- cAUGUCGcuCUUGUagucgucgcgCGCCUGGCgcacCGCg -3' miRNA: 3'- aUGCAGCuuGAACA----------GCGGGCCGa---GCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 28328 | 0.68 | 0.524774 |
Target: 5'- gGCGUCGGACUcgaUGgccuuggccUCGUCgGGCagCGCg -3' miRNA: 3'- aUGCAGCUUGA---AC---------AGCGGgCCGa-GCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 9856 | 0.67 | 0.535537 |
Target: 5'- gGCGUCGAugagcGUgGCaCCGGCgCGCu -3' miRNA: 3'- aUGCAGCUugaa-CAgCG-GGCCGaGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 42356 | 0.67 | 0.545289 |
Target: 5'- aAUGcCGAggugcgccaguucGCcgUGUCGCCCGGCagCGUg -3' miRNA: 3'- aUGCaGCU-------------UGa-ACAGCGGGCCGa-GCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 20619 | 0.67 | 0.579276 |
Target: 5'- gGCGUCGcaggucggUGUCgGCCUGcGCUCGUu -3' miRNA: 3'- aUGCAGCuuga----ACAG-CGGGC-CGAGCG- -5' |
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26939 | 5' | -55.6 | NC_005809.1 | + | 12655 | 0.67 | 0.579276 |
Target: 5'- gGCGUCGggUc-GUCGCCCaucaugcgcaGGCgCGUg -3' miRNA: 3'- aUGCAGCuuGaaCAGCGGG----------CCGaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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