miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2694 3' -58.6 NC_001491.2 + 96243 0.66 0.814886
Target:  5'- -aUCGuGCGCaacACCgGGGCGCAGGUa- -3'
miRNA:   3'- acAGC-CGCGc--UGGgUCCGUGUCUAga -5'
2694 3' -58.6 NC_001491.2 + 85432 0.66 0.814886
Target:  5'- aGUCGGaCGCGuguGCCCcgcGGGCACccuGUCg -3'
miRNA:   3'- aCAGCC-GCGC---UGGG---UCCGUGuc-UAGa -5'
2694 3' -58.6 NC_001491.2 + 4849 0.66 0.806232
Target:  5'- aUGUUGGCGCGcauaGCUCGGGCuguagggaGCGGcgCc -3'
miRNA:   3'- -ACAGCCGCGC----UGGGUCCG--------UGUCuaGa -5'
2694 3' -58.6 NC_001491.2 + 5753 0.66 0.788471
Target:  5'- gGcCGGCGUuuGGCCaUGGGCGCAGAa-- -3'
miRNA:   3'- aCaGCCGCG--CUGG-GUCCGUGUCUaga -5'
2694 3' -58.6 NC_001491.2 + 119626 0.66 0.787568
Target:  5'- cGUUGGCGCGAcgcgcuuCCCGGGgaggagacgcaUGCAGAUg- -3'
miRNA:   3'- aCAGCCGCGCU-------GGGUCC-----------GUGUCUAga -5'
2694 3' -58.6 NC_001491.2 + 95264 0.66 0.779381
Target:  5'- cGUCGcGCuGCGAgaaUCCAGGCGCGGc--- -3'
miRNA:   3'- aCAGC-CG-CGCU---GGGUCCGUGUCuaga -5'
2694 3' -58.6 NC_001491.2 + 115655 0.66 0.779381
Target:  5'- cGUCGGgGCgGAUUCAGGCGCGu---- -3'
miRNA:   3'- aCAGCCgCG-CUGGGUCCGUGUcuaga -5'
2694 3' -58.6 NC_001491.2 + 145855 0.66 0.778465
Target:  5'- -aUCGGUGguggaucCGACCCGGGcCAgGGGUCc -3'
miRNA:   3'- acAGCCGC-------GCUGGGUCC-GUgUCUAGa -5'
2694 3' -58.6 NC_001491.2 + 130778 0.66 0.770162
Target:  5'- gGUCuGGCGgGAgCUgAGGCAC-GAUCUc -3'
miRNA:   3'- aCAG-CCGCgCU-GGgUCCGUGuCUAGA- -5'
2694 3' -58.6 NC_001491.2 + 25034 0.66 0.770162
Target:  5'- aGUCGGCGCcggaACCCauaagGGGCAuCAGcgGUCg -3'
miRNA:   3'- aCAGCCGCGc---UGGG-----UCCGU-GUC--UAGa -5'
2694 3' -58.6 NC_001491.2 + 4122 0.67 0.759883
Target:  5'- -aUCGGCGUguucgagaagaggGACCCGGaaaaGCAGAUCUu -3'
miRNA:   3'- acAGCCGCG-------------CUGGGUCcg--UGUCUAGA- -5'
2694 3' -58.6 NC_001491.2 + 35830 0.67 0.751374
Target:  5'- cGUCGGCccGCaGgUCGGcGCGCAGAUCg -3'
miRNA:   3'- aCAGCCG--CGcUgGGUC-CGUGUCUAGa -5'
2694 3' -58.6 NC_001491.2 + 148139 0.67 0.712641
Target:  5'- --cUGGCGgaGCCCAGGCGCAGGc-- -3'
miRNA:   3'- acaGCCGCgcUGGGUCCGUGUCUaga -5'
2694 3' -58.6 NC_001491.2 + 85971 0.69 0.642617
Target:  5'- cGgCGGCGUGucGCCCagGGGCACAG-UCa -3'
miRNA:   3'- aCaGCCGCGC--UGGG--UCCGUGUCuAGa -5'
2694 3' -58.6 NC_001491.2 + 146826 0.69 0.602242
Target:  5'- --aCGGCGCGcACCgCgAGGCGCAGcUCg -3'
miRNA:   3'- acaGCCGCGC-UGG-G-UCCGUGUCuAGa -5'
2694 3' -58.6 NC_001491.2 + 114261 0.7 0.541468
Target:  5'- --cCGGCGUGGCCCAGGCccuccGCcgcgcucccaucaAGAUCg -3'
miRNA:   3'- acaGCCGCGCUGGGUCCG-----UG-------------UCUAGa -5'
2694 3' -58.6 NC_001491.2 + 100882 0.71 0.503681
Target:  5'- aGUcCGGCGCgggagGACUCGGGCACgAGGUUa -3'
miRNA:   3'- aCA-GCCGCG-----CUGGGUCCGUG-UCUAGa -5'
2694 3' -58.6 NC_001491.2 + 79408 0.72 0.47541
Target:  5'- aUG-CGGgGUGAaguUCCAGGCGCAGGUUUg -3'
miRNA:   3'- -ACaGCCgCGCU---GGGUCCGUGUCUAGA- -5'
2694 3' -58.6 NC_001491.2 + 81492 0.74 0.355466
Target:  5'- --gUGGCGCGGCUCGGGUAggcCGGAUCUc -3'
miRNA:   3'- acaGCCGCGCUGGGUCCGU---GUCUAGA- -5'
2694 3' -58.6 NC_001491.2 + 111175 0.77 0.246524
Target:  5'- aGUCGGCGCaGCgCCAGGCugAGAa-- -3'
miRNA:   3'- aCAGCCGCGcUG-GGUCCGugUCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.