Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26947 | 5' | -68 | NC_005809.1 | + | 24087 | 1.06 | 0.000072 |
Target: 5'- gACCGCGCGGGGCACGGGCACCCCGCUa -3' miRNA: 3'- -UGGCGCGCCCCGUGCCCGUGGGGCGA- -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 11840 | 0.72 | 0.053918 |
Target: 5'- gGCCGCGCcgcGGuuGGCcUGGGCgaACCCCGCg -3' miRNA: 3'- -UGGCGCG---CC--CCGuGCCCG--UGGGGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 5624 | 0.71 | 0.063513 |
Target: 5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3' miRNA: 3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 26242 | 0.71 | 0.067063 |
Target: 5'- -gCGCGCGucgccgaaGGCACGGGCA-CCCGCc -3' miRNA: 3'- ugGCGCGCc-------CCGUGCCCGUgGGGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 38851 | 0.7 | 0.072749 |
Target: 5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3' miRNA: 3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 12989 | 0.69 | 0.08787 |
Target: 5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3' miRNA: 3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 32560 | 0.69 | 0.089537 |
Target: 5'- uACCaGgGCGGGGgC-CGGGCgcgcggcacuuucgACCCCGCc -3' miRNA: 3'- -UGG-CgCGCCCC-GuGCCCG--------------UGGGGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 20703 | 0.69 | 0.09026 |
Target: 5'- gGCUGgaCGaCGaGGCACGGGCACCCCa-- -3' miRNA: 3'- -UGGC--GC-GCcCCGUGCCCGUGGGGcga -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 36956 | 0.69 | 0.092713 |
Target: 5'- cGCCGCGCcacGCGCGaaacGCACCCCGCc -3' miRNA: 3'- -UGGCGCGcccCGUGCc---CGUGGGGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 8997 | 0.69 | 0.095228 |
Target: 5'- cGCCGCGCgGGGGCgcuuccagcagGCGGcGCACCaguuCGUc -3' miRNA: 3'- -UGGCGCG-CCCCG-----------UGCC-CGUGGg---GCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 18143 | 0.69 | 0.095228 |
Target: 5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3' miRNA: 3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 13194 | 0.69 | 0.095228 |
Target: 5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3' miRNA: 3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 27833 | 0.68 | 0.103167 |
Target: 5'- uGCC-CGCGGuGGCGCcGGcCGCgCCGCUg -3' miRNA: 3'- -UGGcGCGCC-CCGUGcCC-GUGgGGCGA- -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 9211 | 0.68 | 0.108513 |
Target: 5'- gGCgGCGCGGcGCacguucuGCGGcGCGCCCgGCg -3' miRNA: 3'- -UGgCGCGCCcCG-------UGCC-CGUGGGgCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 15149 | 0.68 | 0.114724 |
Target: 5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3' miRNA: 3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 15833 | 0.68 | 0.114724 |
Target: 5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3' miRNA: 3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 6161 | 0.67 | 0.117797 |
Target: 5'- --gGgGUGaGGCACGGGCACCCUuaGCg -3' miRNA: 3'- uggCgCGCcCCGUGCCCGUGGGG--CGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 453 | 0.67 | 0.117797 |
Target: 5'- uGCUGCGCGGccaGCuuGCGGGCGCUgUCGCg -3' miRNA: 3'- -UGGCGCGCCc--CG--UGCCCGUGG-GGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 14738 | 0.67 | 0.124174 |
Target: 5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3' miRNA: 3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5' |
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26947 | 5' | -68 | NC_005809.1 | + | 26048 | 0.67 | 0.127481 |
Target: 5'- cCCGCGCGgcGGGCGCGcuccauGCGCUCgGCg -3' miRNA: 3'- uGGCGCGC--CCCGUGCc-----CGUGGGgCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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