miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2695 3' -53.9 NC_001491.2 + 68766 0.66 0.937851
Target:  5'- -aGCUGauGCCCUGGCGgcccucgaagaugccGCGCgugcAGCg -3'
miRNA:   3'- aaCGAU--CGGGAUCGCaau------------CGCGa---UCG- -5'
2695 3' -53.9 NC_001491.2 + 110780 0.66 0.919929
Target:  5'- -cGCgGGCCCcAGuCGccugGGUGCUGGCc -3'
miRNA:   3'- aaCGaUCGGGaUC-GCaa--UCGCGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 146887 0.66 0.919929
Target:  5'- -gGCccgGGCCCccucGGCGUugUAGCGCaccAGCg -3'
miRNA:   3'- aaCGa--UCGGGa---UCGCA--AUCGCGa--UCG- -5'
2695 3' -53.9 NC_001491.2 + 117599 0.66 0.913941
Target:  5'- ----cGGCUCUGGCGggAGCGUcgaAGCg -3'
miRNA:   3'- aacgaUCGGGAUCGCaaUCGCGa--UCG- -5'
2695 3' -53.9 NC_001491.2 + 77689 0.67 0.901194
Target:  5'- -cGCUAacuGgCCUAGCGcuaaUGGCGCguggGGCu -3'
miRNA:   3'- aaCGAU---CgGGAUCGCa---AUCGCGa---UCG- -5'
2695 3' -53.9 NC_001491.2 + 106201 0.67 0.901194
Target:  5'- -cGCUcggGGCCCUGGCcaUGGCaGCacAGCg -3'
miRNA:   3'- aaCGA---UCGGGAUCGcaAUCG-CGa-UCG- -5'
2695 3' -53.9 NC_001491.2 + 79336 0.67 0.894441
Target:  5'- -cGC-GGUCC-AGCGggGucGCGCUGGCa -3'
miRNA:   3'- aaCGaUCGGGaUCGCaaU--CGCGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 88176 0.67 0.880192
Target:  5'- uUUGgU-GCCCcugaUAGCucUGGCGCUAGCg -3'
miRNA:   3'- -AACgAuCGGG----AUCGcaAUCGCGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 122252 0.68 0.872706
Target:  5'- -cGCUcaCCCUuggGGgGUUGGCGCUuGCg -3'
miRNA:   3'- aaCGAucGGGA---UCgCAAUCGCGAuCG- -5'
2695 3' -53.9 NC_001491.2 + 144583 0.68 0.857038
Target:  5'- -gGCUGGCCaUGGCGU----GCUAGCu -3'
miRNA:   3'- aaCGAUCGGgAUCGCAaucgCGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 140648 0.69 0.831901
Target:  5'- gUGCUccgAGCCCcGGCuggGggAGCGgUAGCg -3'
miRNA:   3'- aACGA---UCGGGaUCG---CaaUCGCgAUCG- -5'
2695 3' -53.9 NC_001491.2 + 148148 0.69 0.814145
Target:  5'- -aGCUuGCgCCUGGCGgagcccaGGCGCaGGCa -3'
miRNA:   3'- aaCGAuCG-GGAUCGCaa-----UCGCGaUCG- -5'
2695 3' -53.9 NC_001491.2 + 97677 0.71 0.722381
Target:  5'- -aGuCUGGCCCUGGCGagAGacgauccuguggaGCUAGCc -3'
miRNA:   3'- aaC-GAUCGGGAUCGCaaUCg------------CGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 130614 0.71 0.674231
Target:  5'- cUGUgguGCCCUgcguguuuuugAGCGUUGGCGgUGGUg -3'
miRNA:   3'- aACGau-CGGGA-----------UCGCAAUCGCgAUCG- -5'
2695 3' -53.9 NC_001491.2 + 109029 1.08 0.003712
Target:  5'- -cGCUAGCCCUAGCGUUAGCGCUAGCg -3'
miRNA:   3'- aaCGAUCGGGAUCGCAAUCGCGAUCG- -5'
2695 3' -53.9 NC_001491.2 + 109067 1.09 0.003306
Target:  5'- aUUGCUAGCCCUAGCGUUAGCGCUAGCc -3'
miRNA:   3'- -AACGAUCGGGAUCGCAAUCGCGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.