Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 117611 | 0.69 | 0.829091 |
Target: 5'- aGCGUccgaaaucGGCUCUGGCGggAGCGUcgaAGCg -3' miRNA: 3'- -CGCGa-------UCGGGAUCGCaaUCGCGa--UCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 114938 | 0.69 | 0.81157 |
Target: 5'- uGCGCUGGCCC---CGggAGCGCcaccucAGCc -3' miRNA: 3'- -CGCGAUCGGGaucGCaaUCGCGa-----UCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 122253 | 0.7 | 0.802551 |
Target: 5'- aCGCUcaCCCUuggGGgGUUGGCGCUuGCg -3' miRNA: 3'- cGCGAucGGGA---UCgCAAUCGCGAuCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 140649 | 0.7 | 0.802551 |
Target: 5'- gGUGCUccgAGCCCcGGCuggGggAGCGgUAGCg -3' miRNA: 3'- -CGCGA---UCGGGaUCG---CaaUCGCgAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 144589 | 0.7 | 0.774563 |
Target: 5'- uGCGCUGGCU--GGCcaUGGCguGCUAGCu -3' miRNA: 3'- -CGCGAUCGGgaUCGcaAUCG--CGAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 79344 | 0.7 | 0.764956 |
Target: 5'- aGCGCcuccgcGGUCC-AGCGggGucGCGCUGGCa -3' miRNA: 3'- -CGCGa-----UCGGGaUCGCaaU--CGCGAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 97686 | 0.71 | 0.751301 |
Target: 5'- aGCGUgcagagucUGGCCCUGGCGagAGacgauccuguggaGCUAGCc -3' miRNA: 3'- -CGCG--------AUCGGGAUCGCaaUCg------------CGAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 82657 | 0.71 | 0.735435 |
Target: 5'- cGCGCUGGgCCUgGGCGUUuGGgGUgagAGCc -3' miRNA: 3'- -CGCGAUCgGGA-UCGCAA-UCgCGa--UCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 28883 | 0.72 | 0.68449 |
Target: 5'- uGCGCUcGCUC-AGCGUUGcaaacCGCUGGCu -3' miRNA: 3'- -CGCGAuCGGGaUCGCAAUc----GCGAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 130624 | 0.72 | 0.659562 |
Target: 5'- uGCGCgaccucugugguGCCCUgcguguuuuugAGCGUUGGCGgUGGUg -3' miRNA: 3'- -CGCGau----------CGGGA-----------UCGCAAUCGCgAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 77691 | 0.74 | 0.559691 |
Target: 5'- cGCGCUAacuGgCCUAGCGcuaaUGGCGCguggGGCu -3' miRNA: 3'- -CGCGAU---CgGGAUCGCa---AUCGCGa---UCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 109066 | 1.06 | 0.005995 |
Target: 5'- uUGCUAGCCCUAGCGUUAGCGCUAGCc -3' miRNA: 3'- cGCGAUCGGGAUCGCAAUCGCGAUCG- -5' |
|||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 109031 | 1.15 | 0.001536 |
Target: 5'- aGCGCUAGCCCUAGCGUUAGCGCUAGCg -3' miRNA: 3'- -CGCGAUCGGGAUCGCAAUCGCGAUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home