Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2696 | 5' | -50.3 | NC_001491.2 | + | 110148 | 1.12 | 0.00548 |
Target: 5'- gGAACCACUGCACCUGCAGAAAUCUCCu -3' miRNA: 3'- -CUUGGUGACGUGGACGUCUUUAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 90093 | 0.81 | 0.42635 |
Target: 5'- aGAGCCAC-GCGCCUGUAGugcAUCUCUg -3' miRNA: 3'- -CUUGGUGaCGUGGACGUCuu-UAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 39077 | 0.75 | 0.726577 |
Target: 5'- cGAGCCGgauauUUGCGCCgGCGGAGGUC-CCu -3' miRNA: 3'- -CUUGGU-----GACGUGGaCGUCUUUAGaGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 45115 | 0.72 | 0.88053 |
Target: 5'- gGGGCCGCcGCagauuuggccgggGCCgcgGCGGggGUCUCUa -3' miRNA: 3'- -CUUGGUGaCG-------------UGGa--CGUCuuUAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 137357 | 0.7 | 0.926796 |
Target: 5'- -cGCCGcCUGUGCCUGCGGGccuGUCgacgUCCg -3' miRNA: 3'- cuUGGU-GACGUGGACGUCUu--UAG----AGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 44937 | 0.7 | 0.926796 |
Target: 5'- -cGCCGC-GCACCUGUgauGGAagcGAUUUCCu -3' miRNA: 3'- cuUGGUGaCGUGGACG---UCU---UUAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 26562 | 0.69 | 0.951479 |
Target: 5'- uAACCGCUGCGCCauccaGgGGAAAauugcgCUCCu -3' miRNA: 3'- cUUGGUGACGUGGa----CgUCUUUa-----GAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 81225 | 0.69 | 0.951479 |
Target: 5'- uGACCAC-GCGCC-GCAGGuacgcauccgcGUCUCCg -3' miRNA: 3'- cUUGGUGaCGUGGaCGUCUu----------UAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 58427 | 0.69 | 0.955642 |
Target: 5'- cGAGCCGCUgcaGCACCUcuggGCAGccggCUCUa -3' miRNA: 3'- -CUUGGUGA---CGUGGA----CGUCuuuaGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 29389 | 0.69 | 0.955642 |
Target: 5'- aGugCGC-GCGCCUGCAGGcgcuGUCUaCCc -3' miRNA: 3'- cUugGUGaCGUGGACGUCUu---UAGA-GG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 110857 | 0.69 | 0.959556 |
Target: 5'- cGGCCuagaUGCAgCCUGCGGGAGUUUgCg -3' miRNA: 3'- cUUGGug--ACGU-GGACGUCUUUAGAgG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 59562 | 0.69 | 0.959556 |
Target: 5'- -uGCUgauGCUGCGCCUGUucgauGAGAgCUCCc -3' miRNA: 3'- cuUGG---UGACGUGGACGu----CUUUaGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 85533 | 0.68 | 0.975582 |
Target: 5'- gGGGCCGCUGUuaacaaAUCUGCcAGAAucugggggCUCCa -3' miRNA: 3'- -CUUGGUGACG------UGGACG-UCUUua------GAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 147600 | 0.68 | 0.977881 |
Target: 5'- --gUCGCUGgGCC-GCGGAguguggcAGUCUCCg -3' miRNA: 3'- cuuGGUGACgUGGaCGUCU-------UUAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 137615 | 0.67 | 0.982621 |
Target: 5'- -cGCCGCgGCAgcggccgccCCgggGCGGGAAUUUCCc -3' miRNA: 3'- cuUGGUGaCGU---------GGa--CGUCUUUAGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 18592 | 0.67 | 0.982621 |
Target: 5'- -cGCCGCUGgACUcGCGGAGGUagcgCCa -3' miRNA: 3'- cuUGGUGACgUGGaCGUCUUUAga--GG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 139992 | 0.67 | 0.984589 |
Target: 5'- cGGAcCCGCUGCGCCgcgccgugggGCGGuaccucguGGAUCUCg -3' miRNA: 3'- -CUU-GGUGACGUGGa---------CGUC--------UUUAGAGg -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 22767 | 0.67 | 0.984589 |
Target: 5'- aAACCACaauCACCUGCAccaaGAGUCUCa -3' miRNA: 3'- cUUGGUGac-GUGGACGUc---UUUAGAGg -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 141330 | 0.67 | 0.988011 |
Target: 5'- --cCCGCUGCGCgccacgCUGCGGGcacuGAaCUCCg -3' miRNA: 3'- cuuGGUGACGUG------GACGUCU----UUaGAGG- -5' |
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2696 | 5' | -50.3 | NC_001491.2 | + | 123288 | 0.66 | 0.990813 |
Target: 5'- cGGCCGCUG-ACUcgGCGuGGGUCUCCa -3' miRNA: 3'- cUUGGUGACgUGGa-CGUcUUUAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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