miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26960 5' -53.1 NC_005809.1 + 10787 0.66 0.741798
Target:  5'- cGGCCugGGaUugCAuGU-ACUGCUGCGc -3'
miRNA:   3'- -CCGGugUUcGugGU-CAuUGACGACGU- -5'
26960 5' -53.1 NC_005809.1 + 40807 0.66 0.741798
Target:  5'- cGGCC-CGAcGCGCCAGgcGCagGCcgGCc -3'
miRNA:   3'- -CCGGuGUU-CGUGGUCauUGa-CGa-CGu -5'
26960 5' -53.1 NC_005809.1 + 24897 0.66 0.741798
Target:  5'- cGGUCACGcGCGCCGGaaugAACgUGC-GCGa -3'
miRNA:   3'- -CCGGUGUuCGUGGUCa---UUG-ACGaCGU- -5'
26960 5' -53.1 NC_005809.1 + 22277 0.66 0.730747
Target:  5'- cGGCCGcCGAGCaACCcgcuACUGgUGCGg -3'
miRNA:   3'- -CCGGU-GUUCG-UGGucauUGACgACGU- -5'
26960 5' -53.1 NC_005809.1 + 37768 0.66 0.729636
Target:  5'- cGGCCAgCAaucccgcAGCGCCAGccGGCgUGCUGg- -3'
miRNA:   3'- -CCGGU-GU-------UCGUGGUCa-UUG-ACGACgu -5'
26960 5' -53.1 NC_005809.1 + 34809 0.66 0.719587
Target:  5'- cGGCgCAgAucGCGCCGGUGcugcaaucGCUGaCUGCGc -3'
miRNA:   3'- -CCG-GUgUu-CGUGGUCAU--------UGAC-GACGU- -5'
26960 5' -53.1 NC_005809.1 + 39757 0.66 0.709461
Target:  5'- uGGCCGCGAGCACCuGgcccGACgaaucgacgaaguggGC-GCAc -3'
miRNA:   3'- -CCGGUGUUCGUGGuCa---UUGa--------------CGaCGU- -5'
26960 5' -53.1 NC_005809.1 + 41597 0.66 0.708332
Target:  5'- cGGCCA--GGCgGCCaAGUGGCUgcaaGCUGCc -3'
miRNA:   3'- -CCGGUguUCG-UGG-UCAUUGA----CGACGu -5'
26960 5' -53.1 NC_005809.1 + 25369 0.66 0.708332
Target:  5'- cGGCCaccggGCAGGCGCCAGaAGCccuuUUGCGa -3'
miRNA:   3'- -CCGG-----UGUUCGUGGUCaUUGac--GACGU- -5'
26960 5' -53.1 NC_005809.1 + 34330 0.66 0.708332
Target:  5'- gGGCCGCuugAAGCGCa---AGCUGCUGaCGg -3'
miRNA:   3'- -CCGGUG---UUCGUGgucaUUGACGAC-GU- -5'
26960 5' -53.1 NC_005809.1 + 1059 0.66 0.708332
Target:  5'- cGCCGCGaaccGGCGuCCAGUAACgcgcGCgGUAg -3'
miRNA:   3'- cCGGUGU----UCGU-GGUCAUUGa---CGaCGU- -5'
26960 5' -53.1 NC_005809.1 + 9570 0.66 0.708332
Target:  5'- cGGUgGCGAGCAuCCGGUcgAACacGUUGCGc -3'
miRNA:   3'- -CCGgUGUUCGU-GGUCA--UUGa-CGACGU- -5'
26960 5' -53.1 NC_005809.1 + 19466 0.66 0.701538
Target:  5'- cGCCAuaguucagcuugcgcCAGGUGCCGGUGggcagGCcGCUGCGa -3'
miRNA:   3'- cCGGU---------------GUUCGUGGUCAU-----UGaCGACGU- -5'
26960 5' -53.1 NC_005809.1 + 27700 0.66 0.696994
Target:  5'- aGGCCGC--GCGCCGGcAGCgGCUcGCc -3'
miRNA:   3'- -CCGGUGuuCGUGGUCaUUGaCGA-CGu -5'
26960 5' -53.1 NC_005809.1 + 18383 0.66 0.696994
Target:  5'- uGGCCuuGCcgauGGCGCCGGUGGCgGCcacgucgGCGa -3'
miRNA:   3'- -CCGG--UGu---UCGUGGUCAUUGaCGa------CGU- -5'
26960 5' -53.1 NC_005809.1 + 32915 0.67 0.685587
Target:  5'- cGGCCACGGcCugCAc-GGCUGCUGUu -3'
miRNA:   3'- -CCGGUGUUcGugGUcaUUGACGACGu -5'
26960 5' -53.1 NC_005809.1 + 7256 0.67 0.685587
Target:  5'- cGGCCGCccAGguCUug-AACUGCUGCu -3'
miRNA:   3'- -CCGGUGu-UCguGGucaUUGACGACGu -5'
26960 5' -53.1 NC_005809.1 + 10284 0.67 0.685587
Target:  5'- aGGUCGCGcaacGCGCUGGUguuuuccugGAUUGCUGCu -3'
miRNA:   3'- -CCGGUGUu---CGUGGUCA---------UUGACGACGu -5'
26960 5' -53.1 NC_005809.1 + 4950 0.67 0.674123
Target:  5'- cGCCACGAuGCAgCCGcGUAucgcGCUGCUGg- -3'
miRNA:   3'- cCGGUGUU-CGU-GGU-CAU----UGACGACgu -5'
26960 5' -53.1 NC_005809.1 + 41575 0.67 0.639518
Target:  5'- cGGCCAguGGCGCgGGcAGCggGCUGaCGg -3'
miRNA:   3'- -CCGGUguUCGUGgUCaUUGa-CGAC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.