miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26962 3' -55.4 NC_005809.1 + 7361 0.66 0.637684
Target:  5'- cGACCuCGGCGuCGUUCGUcCAGCg--- -3'
miRNA:   3'- cUUGG-GCCGC-GCGAGCGuGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 9315 0.66 0.637684
Target:  5'- cGACCUGGCgGCGCacgUCGgCGCGGCg--- -3'
miRNA:   3'- cUUGGGCCG-CGCG---AGC-GUGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 12304 0.66 0.637684
Target:  5'- --uUCCGGCGa-CUCGCGCGACc--- -3'
miRNA:   3'- cuuGGGCCGCgcGAGCGUGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 38415 0.66 0.615121
Target:  5'- cGACCaCGGCGCGCaaggUGgGCGGCUu-- -3'
miRNA:   3'- cUUGG-GCCGCGCGa---GCgUGUUGAuac -5'
26962 3' -55.4 NC_005809.1 + 12392 0.66 0.615121
Target:  5'- cGAugCCuGCGCGCUUGUauGCGGCcuugAUGc -3'
miRNA:   3'- -CUugGGcCGCGCGAGCG--UGUUGa---UAC- -5'
26962 3' -55.4 NC_005809.1 + 5632 0.66 0.615121
Target:  5'- uGGCgCGGCGCaGCUUGCugGugGCUGg- -3'
miRNA:   3'- cUUGgGCCGCG-CGAGCGugU--UGAUac -5'
26962 3' -55.4 NC_005809.1 + 18436 0.66 0.615121
Target:  5'- uGGGCCaGGCGCGCagccgGCugGACUAc- -3'
miRNA:   3'- -CUUGGgCCGCGCGag---CGugUUGAUac -5'
26962 3' -55.4 NC_005809.1 + 34802 0.66 0.615121
Target:  5'- uGGACgCCGGCGCagaUCGCGCcgguGCUGc- -3'
miRNA:   3'- -CUUG-GGCCGCGcg-AGCGUGu---UGAUac -5'
26962 3' -55.4 NC_005809.1 + 29427 0.66 0.603858
Target:  5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3'
miRNA:   3'- cuUGGGccGCGCGAGCGUGU--UGauac -5'
26962 3' -55.4 NC_005809.1 + 8380 0.66 0.59262
Target:  5'- cGAACCCGGC---CUCGCGCuGGCUGc- -3'
miRNA:   3'- -CUUGGGCCGcgcGAGCGUG-UUGAUac -5'
26962 3' -55.4 NC_005809.1 + 1080 0.66 0.59262
Target:  5'- cGACCCGGCGCGCguacuucaUGUugGCGGCg--- -3'
miRNA:   3'- cUUGGGCCGCGCGa-------GCG--UGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 15332 0.66 0.581418
Target:  5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3'
miRNA:   3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5'
26962 3' -55.4 NC_005809.1 + 18134 0.67 0.570259
Target:  5'- cGAACuuGuCGCccgGCUCGCGCAGCUu-- -3'
miRNA:   3'- -CUUGggCcGCG---CGAGCGUGUUGAuac -5'
26962 3' -55.4 NC_005809.1 + 26272 0.67 0.559154
Target:  5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3'
miRNA:   3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5'
26962 3' -55.4 NC_005809.1 + 26004 0.67 0.54811
Target:  5'- --gUCCGGCGCGUcgCGCuACAACg--- -3'
miRNA:   3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 5746 0.67 0.54811
Target:  5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3'
miRNA:   3'- cuUGGGcCGCGCGaGCgUGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 8735 0.67 0.54811
Target:  5'- -uGCCCGGCGgGCgcggCGCuaccguCAAC-AUGg -3'
miRNA:   3'- cuUGGGCCGCgCGa---GCGu-----GUUGaUAC- -5'
26962 3' -55.4 NC_005809.1 + 15113 0.67 0.54811
Target:  5'- -uGCgCGGCGCGCUgGCAuacCAGCg--- -3'
miRNA:   3'- cuUGgGCCGCGCGAgCGU---GUUGauac -5'
26962 3' -55.4 NC_005809.1 + 28757 0.67 0.537136
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26962 3' -55.4 NC_005809.1 + 12499 0.67 0.537136
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.