miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26963 5' -50.4 NC_005809.1 + 19955 0.66 0.915003
Target:  5'- -cGACU-ACUGCUGCCGCGcGCGGGGc -3'
miRNA:   3'- gcUUGAgUGGUGGUGGCGUuUGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 30167 0.66 0.915003
Target:  5'- aGGACggCAUCAagGCCGCAuACAAGc -3'
miRNA:   3'- gCUUGa-GUGGUggUGGCGUuUGUUCc -5'
26963 5' -50.4 NC_005809.1 + 8741 0.66 0.9083
Target:  5'- gCGGGCgCGgCGCUACCGUcAACAuGGa -3'
miRNA:   3'- -GCUUGaGUgGUGGUGGCGuUUGUuCC- -5'
26963 5' -50.4 NC_005809.1 + 7481 0.66 0.9083
Target:  5'- aGGACUCgACCAgauCgACCGCGcccAGCAGGu -3'
miRNA:   3'- gCUUGAG-UGGU---GgUGGCGU---UUGUUCc -5'
26963 5' -50.4 NC_005809.1 + 34728 0.66 0.9083
Target:  5'- gCGaAGCcCGCCucACCAUCGCGcugaacaugggcAACGAGGg -3'
miRNA:   3'- -GC-UUGaGUGG--UGGUGGCGU------------UUGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 23229 0.66 0.9083
Target:  5'- uCGGcCUCgGCCACCgACCGCGccucGCuGGGg -3'
miRNA:   3'- -GCUuGAG-UGGUGG-UGGCGUu---UGuUCC- -5'
26963 5' -50.4 NC_005809.1 + 42063 0.66 0.9083
Target:  5'- aGAAC-CGCCugcaaGCCGCCGCGGcGCAGu- -3'
miRNA:   3'- gCUUGaGUGG-----UGGUGGCGUU-UGUUcc -5'
26963 5' -50.4 NC_005809.1 + 38375 0.66 0.901298
Target:  5'- gCGAcguGCUCGCgGCCAacaugcCCGCcauCGAGGc -3'
miRNA:   3'- -GCU---UGAGUGgUGGU------GGCGuuuGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 40029 0.66 0.901298
Target:  5'- aCGAGCgcgGCCcCUACCGCGAAUuccuGGu -3'
miRNA:   3'- -GCUUGag-UGGuGGUGGCGUUUGuu--CC- -5'
26963 5' -50.4 NC_005809.1 + 4993 0.66 0.901298
Target:  5'- ---gUUCGCCGCUACCGCAuuGAUAuuguuGGc -3'
miRNA:   3'- gcuuGAGUGGUGGUGGCGU--UUGUu----CC- -5'
26963 5' -50.4 NC_005809.1 + 37656 0.66 0.896956
Target:  5'- gCGGGCaUCGCUGCCgacguuuccaccgugGCCGaAAACGAGGc -3'
miRNA:   3'- -GCUUG-AGUGGUGG---------------UGGCgUUUGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 24379 0.66 0.894003
Target:  5'- gCGcAUUCGCCACCACaacuCGCugcGCAAGu -3'
miRNA:   3'- -GCuUGAGUGGUGGUG----GCGuu-UGUUCc -5'
26963 5' -50.4 NC_005809.1 + 24216 0.66 0.894003
Target:  5'- ---cCUCGCCGCCG--GCAAACAGGu -3'
miRNA:   3'- gcuuGAGUGGUGGUggCGUUUGUUCc -5'
26963 5' -50.4 NC_005809.1 + 31305 0.66 0.894003
Target:  5'- cCGAGCgUC-CCAgCGCCGCAGcGCAAa- -3'
miRNA:   3'- -GCUUG-AGuGGUgGUGGCGUU-UGUUcc -5'
26963 5' -50.4 NC_005809.1 + 23702 0.66 0.894003
Target:  5'- uCGAACUCAUC-CCgaaCGUggGCAuGGg -3'
miRNA:   3'- -GCUUGAGUGGuGGug-GCGuuUGUuCC- -5'
26963 5' -50.4 NC_005809.1 + 6461 0.66 0.894003
Target:  5'- cCGAACUCACgCACCAC-GaccAUGAGGc -3'
miRNA:   3'- -GCUUGAGUG-GUGGUGgCguuUGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 35062 0.66 0.894003
Target:  5'- uCGGACgccgaaagCGCgCGCCGCCaGUu-GCAAGGg -3'
miRNA:   3'- -GCUUGa-------GUG-GUGGUGG-CGuuUGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 38742 0.66 0.886417
Target:  5'- cCGAGgUCAugacUCACCACgGCAAGCGc-- -3'
miRNA:   3'- -GCUUgAGU----GGUGGUGgCGUUUGUucc -5'
26963 5' -50.4 NC_005809.1 + 34353 0.67 0.878548
Target:  5'- uGAcgGC-CGCCgACCAgCGCGAcuACGAGGc -3'
miRNA:   3'- gCU--UGaGUGG-UGGUgGCGUU--UGUUCC- -5'
26963 5' -50.4 NC_005809.1 + 25443 0.67 0.878548
Target:  5'- gCGGcCUCGCCAUCuGCCGCAAcuuCGuGGu -3'
miRNA:   3'- -GCUuGAGUGGUGG-UGGCGUUu--GUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.