miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26964 3' -56 NC_005809.1 + 40566 0.66 0.582799
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26964 3' -56 NC_005809.1 + 30438 0.66 0.571595
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26964 3' -56 NC_005809.1 + 31066 0.66 0.571595
Target:  5'- -cACGCCAGCGCag-GCGCuGCCc-- -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGcUGGagu -5'
26964 3' -56 NC_005809.1 + 13136 0.66 0.571595
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26964 3' -56 NC_005809.1 + 22839 0.66 0.571595
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26964 3' -56 NC_005809.1 + 23993 0.66 0.560443
Target:  5'- cGGACgGCCAGgccgucacCGCGa-GCGCGGCCUCc -3'
miRNA:   3'- -UUUG-UGGUC--------GCGCaaCGCGCUGGAGu -5'
26964 3' -56 NC_005809.1 + 28747 0.66 0.560443
Target:  5'- uGGCAucguCCAGCGCGgUGCGCu-UCUCGg -3'
miRNA:   3'- uUUGU----GGUCGCGCaACGCGcuGGAGU- -5'
26964 3' -56 NC_005809.1 + 12521 0.66 0.560443
Target:  5'- -----aCAGCGCGUcgaggugcUGCuCGACCUCGg -3'
miRNA:   3'- uuugugGUCGCGCA--------ACGcGCUGGAGU- -5'
26964 3' -56 NC_005809.1 + 2231 0.66 0.560443
Target:  5'- -cACGCgCAGCagGCGgcGCGUGGCCgcgCAa -3'
miRNA:   3'- uuUGUG-GUCG--CGCaaCGCGCUGGa--GU- -5'
26964 3' -56 NC_005809.1 + 29462 0.66 0.549352
Target:  5'- uGGCACCAG-GCGacgaagcGCGCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCgCGCaa-----CGCGCUGGagu -5'
26964 3' -56 NC_005809.1 + 14781 0.66 0.549352
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26964 3' -56 NC_005809.1 + 12527 0.66 0.54273
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5'
26964 3' -56 NC_005809.1 + 31509 0.66 0.527384
Target:  5'- --cCGCCGGCGUGcUGCuG-GGCCUCGc -3'
miRNA:   3'- uuuGUGGUCGCGCaACG-CgCUGGAGU- -5'
26964 3' -56 NC_005809.1 + 14863 0.66 0.527384
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26964 3' -56 NC_005809.1 + 34956 0.66 0.527384
Target:  5'- -cACGuguCCGGCGC--UGCGCGACCa-- -3'
miRNA:   3'- uuUGU---GGUCGCGcaACGCGCUGGagu -5'
26964 3' -56 NC_005809.1 + 13225 0.67 0.520857
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26964 3' -56 NC_005809.1 + 26508 0.67 0.516523
Target:  5'- cGGCGCCGcGCGCGgcggccacgUGCGCGaacugGCCUaCAa -3'
miRNA:   3'- uUUGUGGU-CGCGCa--------ACGCGC-----UGGA-GU- -5'
26964 3' -56 NC_005809.1 + 10470 0.67 0.516523
Target:  5'- cAGCgGCCAGgGCGUUGagcaaCGCGGCCg-- -3'
miRNA:   3'- uUUG-UGGUCgCGCAAC-----GCGCUGGagu -5'
26964 3' -56 NC_005809.1 + 29389 0.67 0.516523
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26964 3' -56 NC_005809.1 + 9497 0.67 0.505753
Target:  5'- ---gGCCGcCGCGUcgcUGCGCGACC-CGa -3'
miRNA:   3'- uuugUGGUcGCGCA---ACGCGCUGGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.