Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26964 | 5' | -58.6 | NC_005809.1 | + | 29274 | 0.66 | 0.48449 |
Target: 5'- -aCAAcGCCGGC--CCCGGCGcGCUGCa -3' miRNA: 3'- uaGUUcCGGCCGcaGGGCUGU-UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 1350 | 0.66 | 0.48449 |
Target: 5'- -cCGuGGUCGGCGgccuugcgcaUCCGGCGACCGa -3' miRNA: 3'- uaGUuCCGGCCGCa---------GGGCUGUUGGCg -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 28927 | 0.66 | 0.48449 |
Target: 5'- -cCAAGGacauggaCGGCGcgCCgGACuugcuGCCGCu -3' miRNA: 3'- uaGUUCCg------GCCGCa-GGgCUGu----UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 24155 | 0.66 | 0.474349 |
Target: 5'- ----uGGCCcaGCGcCUCGACGGCUGCg -3' miRNA: 3'- uaguuCCGGc-CGCaGGGCUGUUGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 4255 | 0.66 | 0.474349 |
Target: 5'- aGUCGGuGCCGGcCGUCagcgCCGGCAuggugaugGCCGUg -3' miRNA: 3'- -UAGUUcCGGCC-GCAG----GGCUGU--------UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 38245 | 0.66 | 0.461328 |
Target: 5'- cAUCAAGGCUGGCaccaucguggagGUCaaCGGCAagcuggugcaguucACCGCc -3' miRNA: 3'- -UAGUUCCGGCCG------------CAGg-GCUGU--------------UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 1464 | 0.66 | 0.454394 |
Target: 5'- -gCGcGGUCGGCGgccUCCUGGCAgGCCGg -3' miRNA: 3'- uaGUuCCGGCCGC---AGGGCUGU-UGGCg -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 5575 | 0.66 | 0.454394 |
Target: 5'- uGUCGAGGCCGGCauacUCCaCGAauuuGGCC-Ca -3' miRNA: 3'- -UAGUUCCGGCCGc---AGG-GCUg---UUGGcG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 19236 | 0.66 | 0.449477 |
Target: 5'- -gCGAGGCCGucgaauuGCGcggcuaccacgucaUCCCGGCcagugccGGCCGCa -3' miRNA: 3'- uaGUUCCGGC-------CGC--------------AGGGCUG-------UUGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 37258 | 0.66 | 0.444589 |
Target: 5'- uAUCcguGGCCGGCGaccuggaaaauaUCgacgccguggCCGACAacGCCGCg -3' miRNA: 3'- -UAGuu-CCGGCCGC------------AG----------GGCUGU--UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 6385 | 0.66 | 0.444588 |
Target: 5'- aAUCAggcgcAGGCCGGCcggCCCGGugUAGUCGCg -3' miRNA: 3'- -UAGU-----UCCGGCCGca-GGGCU--GUUGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 36488 | 0.66 | 0.444588 |
Target: 5'- -gCAAGGCC-GCG-CUCGACGACUucgagGCg -3' miRNA: 3'- uaGUUCCGGcCGCaGGGCUGUUGG-----CG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 25677 | 0.66 | 0.444588 |
Target: 5'- cGUCAucaGCCGGCGgaUUUCGGCAacGCUGCu -3' miRNA: 3'- -UAGUuc-CGGCCGC--AGGGCUGU--UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 31288 | 0.66 | 0.444588 |
Target: 5'- -aCGuGGCa-GCGaagCCUGGCGACCGCg -3' miRNA: 3'- uaGUuCCGgcCGCa--GGGCUGUUGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 34377 | 0.66 | 0.443615 |
Target: 5'- -aCGAGGCCGuGCGcgaugaaaUCgCCGGCAGCauccgggCGCa -3' miRNA: 3'- uaGUUCCGGC-CGC--------AG-GGCUGUUG-------GCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 17838 | 0.66 | 0.433941 |
Target: 5'- gGUCGAGGCCGcgcaggcGCGguggaagcggCCCGAcCGACUGg -3' miRNA: 3'- -UAGUUCCGGC-------CGCa---------GGGCU-GUUGGCg -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 12948 | 0.66 | 0.432021 |
Target: 5'- cAUCAAGcCCGGCcacaagcgCCCGGCcuggacaacuggcaAACCGCg -3' miRNA: 3'- -UAGUUCcGGCCGca------GGGCUG--------------UUGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 35142 | 0.67 | 0.425341 |
Target: 5'- cGUCGAGGaa-GUGUCCgGGCGcCCGCu -3' miRNA: 3'- -UAGUUCCggcCGCAGGgCUGUuGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 31609 | 0.67 | 0.415904 |
Target: 5'- -aCAGguGGCCGcaGUGUcCCCGGCugucGCCGCg -3' miRNA: 3'- uaGUU--CCGGC--CGCA-GGGCUGu---UGGCG- -5' |
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26964 | 5' | -58.6 | NC_005809.1 | + | 11562 | 0.67 | 0.406598 |
Target: 5'- ----cGGCCGGCaagCCCGugGACagguCGCg -3' miRNA: 3'- uaguuCCGGCCGca-GGGCugUUG----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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