miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26964 5' -58.6 NC_005809.1 + 272 0.71 0.237141
Target:  5'- cUUGAGGCaCGGCGUCCag-UAGCUGCg -3'
miRNA:   3'- uAGUUCCG-GCCGCAGGgcuGUUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 733 0.67 0.379477
Target:  5'- aGUCGAGcGCCuGGCGgaugaCCGACAcguaguuguucACCGUc -3'
miRNA:   3'- -UAGUUC-CGG-CCGCag---GGCUGU-----------UGGCG- -5'
26964 5' -58.6 NC_005809.1 + 1350 0.66 0.48449
Target:  5'- -cCGuGGUCGGCGgccuugcgcaUCCGGCGACCGa -3'
miRNA:   3'- uaGUuCCGGCCGCa---------GGGCUGUUGGCg -5'
26964 5' -58.6 NC_005809.1 + 1464 0.66 0.454394
Target:  5'- -gCGcGGUCGGCGgccUCCUGGCAgGCCGg -3'
miRNA:   3'- uaGUuCCGGCCGC---AGGGCUGU-UGGCg -5'
26964 5' -58.6 NC_005809.1 + 1706 0.75 0.120473
Target:  5'- uUCGccguGGGCCGGCGUgCCGGCGAggGCg -3'
miRNA:   3'- uAGU----UCCGGCCGCAgGGCUGUUggCG- -5'
26964 5' -58.6 NC_005809.1 + 1757 0.67 0.388382
Target:  5'- gGUCAuGGCCGGCcugcgCCUGGCGcgucggGCCGa -3'
miRNA:   3'- -UAGUuCCGGCCGca---GGGCUGU------UGGCg -5'
26964 5' -58.6 NC_005809.1 + 4255 0.66 0.474349
Target:  5'- aGUCGGuGCCGGcCGUCagcgCCGGCAuggugaugGCCGUg -3'
miRNA:   3'- -UAGUUcCGGCC-GCAG----GGCUGU--------UGGCG- -5'
26964 5' -58.6 NC_005809.1 + 4823 0.68 0.332193
Target:  5'- gGUCGGGGCCGGCGcCgUCGucgaauucacggaaaGCGGCCaGCu -3'
miRNA:   3'- -UAGUUCCGGCCGCaG-GGC---------------UGUUGG-CG- -5'
26964 5' -58.6 NC_005809.1 + 5575 0.66 0.454394
Target:  5'- uGUCGAGGCCGGCauacUCCaCGAauuuGGCC-Ca -3'
miRNA:   3'- -UAGUUCCGGCCGc---AGG-GCUg---UUGGcG- -5'
26964 5' -58.6 NC_005809.1 + 6385 0.66 0.444588
Target:  5'- aAUCAggcgcAGGCCGGCcggCCCGGugUAGUCGCg -3'
miRNA:   3'- -UAGU-----UCCGGCCGca-GGGCU--GUUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 7701 0.69 0.305665
Target:  5'- cUCGGcGGCCGGCuUgCCGAUgAACUGCa -3'
miRNA:   3'- uAGUU-CCGGCCGcAgGGCUG-UUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 8034 0.67 0.397422
Target:  5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3'
miRNA:   3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 8522 0.72 0.20199
Target:  5'- ---uGGGCCguGGCGUaggcgaugaaacgCUCGACAGCCGCg -3'
miRNA:   3'- uaguUCCGG--CCGCA-------------GGGCUGUUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 10001 0.68 0.37071
Target:  5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3'
miRNA:   3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5'
26964 5' -58.6 NC_005809.1 + 10210 0.69 0.290834
Target:  5'- ----cGGCCGGgGcCUCGGCGgcgACCGCa -3'
miRNA:   3'- uaguuCCGGCCgCaGGGCUGU---UGGCG- -5'
26964 5' -58.6 NC_005809.1 + 11562 0.67 0.406598
Target:  5'- ----cGGCCGGCaagCCCGugGACagguCGCg -3'
miRNA:   3'- uaguuCCGGCCGca-GGGCugUUG----GCG- -5'
26964 5' -58.6 NC_005809.1 + 12488 0.7 0.256236
Target:  5'- --aAGGGCCguGGCG-CCCGGgcGCCGCa -3'
miRNA:   3'- uagUUCCGG--CCGCaGGGCUguUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 12948 0.66 0.432021
Target:  5'- cAUCAAGcCCGGCcacaagcgCCCGGCcuggacaacuggcaAACCGCg -3'
miRNA:   3'- -UAGUUCcGGCCGca------GGGCUG--------------UUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 13219 0.68 0.356973
Target:  5'- -gCAAGGCCaccGGCGcgUgguucgaggacuuggCCGGCGACCGCc -3'
miRNA:   3'- uaGUUCCGG---CCGCa-G---------------GGCUGUUGGCG- -5'
26964 5' -58.6 NC_005809.1 + 13308 0.68 0.332193
Target:  5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3'
miRNA:   3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.