miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26965 5' -60.8 NC_005809.1 + 5759 0.66 0.395903
Target:  5'- ---gGGCAGCGAgUGCgCCaGgGCCUu -3'
miRNA:   3'- gcugCCGUCGCUgACGgGGaUgCGGG- -5'
26965 5' -60.8 NC_005809.1 + 36691 0.66 0.395903
Target:  5'- gGugGGCGuugauCGACgagaacgucGCgCUCUGCGCCCa -3'
miRNA:   3'- gCugCCGUc----GCUGa--------CG-GGGAUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 21455 0.66 0.395903
Target:  5'- gCGGCGGgGGCGGCaggauguugGCCUCgaccaUGCGCUg -3'
miRNA:   3'- -GCUGCCgUCGCUGa--------CGGGG-----AUGCGGg -5'
26965 5' -60.8 NC_005809.1 + 38829 0.66 0.395903
Target:  5'- gCGGCGGCAcCGACgUGCCCaccaccgGCGUg- -3'
miRNA:   3'- -GCUGCCGUcGCUG-ACGGGga-----UGCGgg -5'
26965 5' -60.8 NC_005809.1 + 28142 0.66 0.393241
Target:  5'- gGGCGGCAGCaGCuUGCCgguggucagaucgaCC-ACGCCg -3'
miRNA:   3'- gCUGCCGUCGcUG-ACGG--------------GGaUGCGGg -5'
26965 5' -60.8 NC_005809.1 + 25383 0.66 0.387074
Target:  5'- uCGGCGGCGGCGAaaucaGCCCggaaAUGUUCg -3'
miRNA:   3'- -GCUGCCGUCGCUga---CGGGga--UGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 7772 0.66 0.387074
Target:  5'- --cCGGC-GCGAuCUGCgCCgGCGUCCa -3'
miRNA:   3'- gcuGCCGuCGCU-GACGgGGaUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 21815 0.66 0.384451
Target:  5'- cCGGCaguuGCAGCGGCggguUGCUcuuguagucgauggCCUGCGCCUu -3'
miRNA:   3'- -GCUGc---CGUCGCUG----ACGG--------------GGAUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 11493 0.66 0.378376
Target:  5'- cCGAggUGaGCAGCGGCaccagGCCCCUgAUGUUCg -3'
miRNA:   3'- -GCU--GC-CGUCGCUGa----CGGGGA-UGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 28404 0.66 0.378376
Target:  5'- cCGGCGGC-GCGGC-GCCaguagAUGCCUg -3'
miRNA:   3'- -GCUGCCGuCGCUGaCGGgga--UGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 24140 0.66 0.378376
Target:  5'- aGcCGGCugcGCGcCUGgCCCaGCGCCUc -3'
miRNA:   3'- gCuGCCGu--CGCuGACgGGGaUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 33080 0.66 0.378376
Target:  5'- -cACGGCGGaacaGGCUGgCaugACGCCCg -3'
miRNA:   3'- gcUGCCGUCg---CUGACgGggaUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 7988 0.66 0.378376
Target:  5'- aGGCaGCAGCaccacggcgucgGACgUGCCCUUgGCGCCa -3'
miRNA:   3'- gCUGcCGUCG------------CUG-ACGGGGA-UGCGGg -5'
26965 5' -60.8 NC_005809.1 + 35381 0.66 0.376652
Target:  5'- cCGAUGGCaagcccAGCGuC-GCCCCcgaauccgacaaGCGCCCg -3'
miRNA:   3'- -GCUGCCG------UCGCuGaCGGGGa-----------UGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 16414 0.66 0.36981
Target:  5'- gCGACcgcaucGCAGaCGGCgaGCCgCUGCGCCa -3'
miRNA:   3'- -GCUGc-----CGUC-GCUGa-CGGgGAUGCGGg -5'
26965 5' -60.8 NC_005809.1 + 13468 0.66 0.36981
Target:  5'- uGAcCGGCAGCaagucccgcacgGGcCUGaCCUCgGCGCCCg -3'
miRNA:   3'- gCU-GCCGUCG------------CU-GAC-GGGGaUGCGGG- -5'
26965 5' -60.8 NC_005809.1 + 14776 0.66 0.36981
Target:  5'- gGACGuGCuGCGGCUGCgCg-GCGCgCg -3'
miRNA:   3'- gCUGC-CGuCGCUGACGgGgaUGCGgG- -5'
26965 5' -60.8 NC_005809.1 + 12263 0.66 0.36896
Target:  5'- uCGGCGGUAGUGuccugggcggguuGCUGgCCCaGCGUgCCg -3'
miRNA:   3'- -GCUGCCGUCGC-------------UGACgGGGaUGCG-GG- -5'
26965 5' -60.8 NC_005809.1 + 38128 0.66 0.361377
Target:  5'- uGACGGUgccaccgcuGGCGGCUuCCCCcugGCGCg- -3'
miRNA:   3'- gCUGCCG---------UCGCUGAcGGGGa--UGCGgg -5'
26965 5' -60.8 NC_005809.1 + 6324 0.66 0.361377
Target:  5'- aGAC-GCGGCGcguuCcGCCCCagccaaaGCGCCCg -3'
miRNA:   3'- gCUGcCGUCGCu---GaCGGGGa------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.