Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26966 | 3' | -62.3 | NC_005809.1 | + | 41887 | 0.66 | 0.297653 |
Target: 5'- uGGGcgGCc-CgGCCGGCGccGCCGUa -3' miRNA: 3'- -UCCuaCGacGgCGGCCGCuaCGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 17040 | 0.66 | 0.283324 |
Target: 5'- cGGggGC-GCUGCCGGCG--GCgGCa -3' miRNA: 3'- uCCuaCGaCGGCGGCCGCuaCGgCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 5096 | 0.66 | 0.281921 |
Target: 5'- cAGGcgGCcggcccagcguccggUGCgGCUGGCGccguugaacugcaacGUGCCGCg -3' miRNA: 3'- -UCCuaCG---------------ACGgCGGCCGC---------------UACGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 4378 | 0.66 | 0.276366 |
Target: 5'- cGGAUGC-GCaGCCaGGCGccGUCGCg -3' miRNA: 3'- uCCUACGaCGgCGG-CCGCuaCGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 14819 | 0.66 | 0.276366 |
Target: 5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3' miRNA: 3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 16950 | 0.66 | 0.269546 |
Target: 5'- uGGAcGC-GCUGCUGGCGccgcGCCGCc -3' miRNA: 3'- uCCUaCGaCGGCGGCCGCua--CGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 18351 | 0.66 | 0.269546 |
Target: 5'- aGGGAUGaccaccuguUUGCCGgCGGCGAgguuggccuUGCCGa- -3' miRNA: 3'- -UCCUAC---------GACGGCgGCCGCU---------ACGGCga -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 3330 | 0.66 | 0.269546 |
Target: 5'- uAGG-UGCUGUCGCUGGUGGaaUGCgucaCGCc -3' miRNA: 3'- -UCCuACGACGGCGGCCGCU--ACG----GCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 15077 | 0.66 | 0.269546 |
Target: 5'- uGGcgGCcgagGCCGCCGGCauccucgcguGGUGCgUGCg -3' miRNA: 3'- uCCuaCGa---CGGCGGCCG----------CUACG-GCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 14898 | 0.66 | 0.267526 |
Target: 5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3' miRNA: 3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 8679 | 0.66 | 0.262861 |
Target: 5'- cGGcUGCUgcGCCGCCcaGGUGugcGCCGCg -3' miRNA: 3'- uCCuACGA--CGGCGG--CCGCua-CGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 1848 | 0.66 | 0.2622 |
Target: 5'- cAGGAUGUUGCCGCCGucuugcagguucaGCccgugGCCGg- -3' miRNA: 3'- -UCCUACGACGGCGGC-------------CGcua--CGGCga -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 4816 | 0.67 | 0.256312 |
Target: 5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3' miRNA: 3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 8512 | 0.67 | 0.256312 |
Target: 5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3' miRNA: 3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 19042 | 0.67 | 0.256312 |
Target: 5'- uGGuaGCgGCCGCCGGCGgcGUCGa- -3' miRNA: 3'- uCCuaCGaCGGCGGCCGCuaCGGCga -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 36651 | 0.67 | 0.256312 |
Target: 5'- uGGGAUGCcGCCaG-CGGCGAaaagaUGCCGg- -3' miRNA: 3'- -UCCUACGaCGG-CgGCCGCU-----ACGGCga -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 30553 | 0.67 | 0.249898 |
Target: 5'- cGGGucuuuGUGCcgGCCGCUGuaGAUGCgGCa -3' miRNA: 3'- -UCC-----UACGa-CGGCGGCcgCUACGgCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 26139 | 0.67 | 0.243616 |
Target: 5'- --cGUGUUcaacGCCGCCGGCGAUuaccccgcgGCCGUg -3' miRNA: 3'- uccUACGA----CGGCGGCCGCUA---------CGGCGa -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 5183 | 0.67 | 0.237467 |
Target: 5'- gAGGGuuuuguauuUGCUGgUGCUGGUGGUGCUGg- -3' miRNA: 3'- -UCCU---------ACGACgGCGGCCGCUACGGCga -5' |
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26966 | 3' | -62.3 | NC_005809.1 | + | 33240 | 0.67 | 0.237467 |
Target: 5'- aAGGAUGCcGCCGCCcgccGCGccgacgugcGCCGCc -3' miRNA: 3'- -UCCUACGaCGGCGGc---CGCua-------CGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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