Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26966 | 5' | -58.1 | NC_005809.1 | + | 39677 | 0.66 | 0.501327 |
Target: 5'- aUCGGGGCG-CG-CGGCGuCUGUGcCCAu -3' miRNA: 3'- -AGUCCUGUgGCgGCUGC-GACACuGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 14896 | 0.66 | 0.501327 |
Target: 5'- uUCAGGGuCugCGCggCGAucUGCUGcUGGCCGg -3' miRNA: 3'- -AGUCCU-GugGCG--GCU--GCGAC-ACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 9183 | 0.66 | 0.501327 |
Target: 5'- aCuuGGCGCCGUCGACGU--UGGCCu -3' miRNA: 3'- aGucCUGUGGCGGCUGCGacACUGGu -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 38301 | 0.66 | 0.491007 |
Target: 5'- aCAcGGccauCACCauGCCGGCGCUGacGGCCGg -3' miRNA: 3'- aGU-CCu---GUGG--CGGCUGCGACa-CUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 17041 | 0.66 | 0.480786 |
Target: 5'- -gGGGGCGCUGCCGGCgGCggcaaaaccGACCu -3' miRNA: 3'- agUCCUGUGGCGGCUG-CGaca------CUGGu -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 13185 | 0.66 | 0.480786 |
Target: 5'- gCuGGGCGCCcuugGCCGGCGUUGUacGCCu -3' miRNA: 3'- aGuCCUGUGG----CGGCUGCGACAc-UGGu -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 9488 | 0.66 | 0.470669 |
Target: 5'- -gAGGAUguagGCCGCCGcguCGCUGcgcGACCc -3' miRNA: 3'- agUCCUG----UGGCGGCu--GCGACa--CUGGu -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 39742 | 0.66 | 0.470669 |
Target: 5'- ---uGGCGCCGCUG-CGC-GUGGCCGc -3' miRNA: 3'- agucCUGUGGCGGCuGCGaCACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 19453 | 0.66 | 0.460663 |
Target: 5'- gUCAGGAgccguUACCGCUGuCGCcGUGggcGCCGc -3' miRNA: 3'- -AGUCCU-----GUGGCGGCuGCGaCAC---UGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 6719 | 0.66 | 0.460663 |
Target: 5'- aCGGuGAaaaGCCGCUG-CGCUG-GGCCGc -3' miRNA: 3'- aGUC-CUg--UGGCGGCuGCGACaCUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 28082 | 0.67 | 0.45077 |
Target: 5'- gCAGGugGCCGCggcgucguauucCGuCGCgGUGAUCGu -3' miRNA: 3'- aGUCCugUGGCG------------GCuGCGaCACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 18399 | 0.67 | 0.406831 |
Target: 5'- cUCAuGGACacgccgaagcgcgcaGCCGUCGagGCGCUG-GGCCAg -3' miRNA: 3'- -AGU-CCUG---------------UGGCGGC--UGCGACaCUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 11508 | 0.67 | 0.403139 |
Target: 5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3' miRNA: 3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 30562 | 0.67 | 0.403139 |
Target: 5'- --cGGcCACgGCCG-CGCUGcUGGCCGa -3' miRNA: 3'- aguCCuGUGgCGGCuGCGAC-ACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 37695 | 0.67 | 0.403139 |
Target: 5'- -gAGGcCGCCGUCGccGCGCUGggcaacgaccUGACCGg -3' miRNA: 3'- agUCCuGUGGCGGC--UGCGAC----------ACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 4795 | 0.69 | 0.342074 |
Target: 5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3' miRNA: 3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 18735 | 0.69 | 0.325899 |
Target: 5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3' miRNA: 3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 8284 | 0.69 | 0.318026 |
Target: 5'- cCAGGGCcacGCUGCCGGgGCaGUGcaGCCAg -3' miRNA: 3'- aGUCCUG---UGGCGGCUgCGaCAC--UGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 41895 | 0.69 | 0.310298 |
Target: 5'- cCGGccGGCGCCGCCGuagGCGCcugGUGGCUAc -3' miRNA: 3'- aGUC--CUGUGGCGGC---UGCGa--CACUGGU- -5' |
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26966 | 5' | -58.1 | NC_005809.1 | + | 35837 | 0.7 | 0.273805 |
Target: 5'- -uGGGGCGCCaagGCCGACGCcGUGcUCAa -3' miRNA: 3'- agUCCUGUGG---CGGCUGCGaCACuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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