miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26967 3' -58.7 NC_005809.1 + 34459 0.66 0.4396
Target:  5'- cAACGCcgGCCGCGCgGUgCaGGGCc-- -3'
miRNA:   3'- -UUGCGa-UGGCGUGgCAgGaCCCGaug -5'
26967 3' -58.7 NC_005809.1 + 36394 0.66 0.4396
Target:  5'- aAACGCUGCgGCaagACCGgCCUGcGCUGg -3'
miRNA:   3'- -UUGCGAUGgCG---UGGCaGGACcCGAUg -5'
26967 3' -58.7 NC_005809.1 + 8543 0.66 0.429849
Target:  5'- aAACGCUcgacaGCCGCGCCGauggcGGGCaGCg -3'
miRNA:   3'- -UUGCGA-----UGGCGUGGCagga-CCCGaUG- -5'
26967 3' -58.7 NC_005809.1 + 27427 0.66 0.429849
Target:  5'- uGGCGC-ACCGCGCCcggcggccgcagGcCCUGGcGCUGg -3'
miRNA:   3'- -UUGCGaUGGCGUGG------------CaGGACC-CGAUg -5'
26967 3' -58.7 NC_005809.1 + 14386 0.66 0.429849
Target:  5'- cAAgGC-GCCGCACC-UgCUGGGCguggGCa -3'
miRNA:   3'- -UUgCGaUGGCGUGGcAgGACCCGa---UG- -5'
26967 3' -58.7 NC_005809.1 + 1678 0.66 0.420226
Target:  5'- uGAUGCUGCCGCGCagguaGUcgagaaauucgCCgUGGGCcgGCg -3'
miRNA:   3'- -UUGCGAUGGCGUGg----CA-----------GG-ACCCGa-UG- -5'
26967 3' -58.7 NC_005809.1 + 20740 0.66 0.420226
Target:  5'- cAUGCUGCUgGCGCCGUagaGGcGCUGCg -3'
miRNA:   3'- uUGCGAUGG-CGUGGCAggaCC-CGAUG- -5'
26967 3' -58.7 NC_005809.1 + 21405 0.66 0.410735
Target:  5'- cGCGCagcagGCCGCGCUGUugaaCCaGGGCgcggACa -3'
miRNA:   3'- uUGCGa----UGGCGUGGCA----GGaCCCGa---UG- -5'
26967 3' -58.7 NC_005809.1 + 23532 0.66 0.410735
Target:  5'- cGACGCcGCCgGCgGCCGcuaCCaGGGCUACc -3'
miRNA:   3'- -UUGCGaUGG-CG-UGGCa--GGaCCCGAUG- -5'
26967 3' -58.7 NC_005809.1 + 35518 0.67 0.374136
Target:  5'- cGACGCUGCCGC-CCGaggCCaUGcgccuGCUGCa -3'
miRNA:   3'- -UUGCGAUGGCGuGGCa--GG-ACc----CGAUG- -5'
26967 3' -58.7 NC_005809.1 + 8549 0.67 0.374136
Target:  5'- -uCGCagGCCGCGCuCGaccucaUCCUGGGCg-- -3'
miRNA:   3'- uuGCGa-UGGCGUG-GC------AGGACCCGaug -5'
26967 3' -58.7 NC_005809.1 + 28814 0.67 0.365337
Target:  5'- gAGCaGCcAgCGCGCCGUCgUcGGGUUGCg -3'
miRNA:   3'- -UUG-CGaUgGCGUGGCAGgA-CCCGAUG- -5'
26967 3' -58.7 NC_005809.1 + 11835 0.67 0.348174
Target:  5'- aGAC-CgGCCGCGCCGcgguuggCCUGGGCg-- -3'
miRNA:   3'- -UUGcGaUGGCGUGGCa------GGACCCGaug -5'
26967 3' -58.7 NC_005809.1 + 8643 0.68 0.331594
Target:  5'- aAACGCcccagGCCGCGCCGUacucgCUGugugcagcGGCUGCu -3'
miRNA:   3'- -UUGCGa----UGGCGUGGCAg----GAC--------CCGAUG- -5'
26967 3' -58.7 NC_005809.1 + 427 0.68 0.307827
Target:  5'- -uCGUcgGCCGUACCuuGUCgUUGGGCUGCu -3'
miRNA:   3'- uuGCGa-UGGCGUGG--CAG-GACCCGAUG- -5'
26967 3' -58.7 NC_005809.1 + 34402 0.69 0.278195
Target:  5'- gGACGCca--GCGCCuUCCUGGGCcGCa -3'
miRNA:   3'- -UUGCGauggCGUGGcAGGACCCGaUG- -5'
26967 3' -58.7 NC_005809.1 + 22836 0.7 0.24698
Target:  5'- cGCGCUGCCGacaGCCGaCagcgcgcgcugcgaaUUGGGCUGCu -3'
miRNA:   3'- uUGCGAUGGCg--UGGCaG---------------GACCCGAUG- -5'
26967 3' -58.7 NC_005809.1 + 10222 0.7 0.244407
Target:  5'- cGGCgGCgACCGCAgCGaCCUGGGCgGCg -3'
miRNA:   3'- -UUG-CGaUGGCGUgGCaGGACCCGaUG- -5'
26967 3' -58.7 NC_005809.1 + 27732 0.7 0.238073
Target:  5'- cGGCGCUggccgccaACgGCAUCGaCCUGGGCgaagGCa -3'
miRNA:   3'- -UUGCGA--------UGgCGUGGCaGGACCCGa---UG- -5'
26967 3' -58.7 NC_005809.1 + 22734 0.71 0.187075
Target:  5'- cACGCUGCUGaacaaaACCGgCCUGGGCa-- -3'
miRNA:   3'- uUGCGAUGGCg-----UGGCaGGACCCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.