Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26967 | 5' | -51.1 | NC_005809.1 | + | 32577 | 0.66 | 0.885832 |
Target: 5'- -cGUAUCAGGacaccGCCGACGCUGug-ACCa -3' miRNA: 3'- gcCAUAGUUC-----CGGCUGUGGUucaUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 31101 | 0.66 | 0.885832 |
Target: 5'- uCGGUG-C-AGGCCGGCGaguGGUGCg -3' miRNA: 3'- -GCCAUaGuUCCGGCUGUgguUCAUGg -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 339 | 0.66 | 0.885832 |
Target: 5'- gCGGUggcGUCGcgcagcAGGCCGucCGCCAGGc-CCg -3' miRNA: 3'- -GCCA---UAGU------UCCGGCu-GUGGUUCauGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 35722 | 0.66 | 0.881153 |
Target: 5'- uGGUGgggggccuacgaaAAGGCCGuCGCCGAGgGCa -3' miRNA: 3'- gCCAUag-----------UUCCGGCuGUGGUUCaUGg -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 33303 | 0.66 | 0.877977 |
Target: 5'- cCGGUGUaccGGGCCGACcgcuuCCugcGGUAUg -3' miRNA: 3'- -GCCAUAgu-UCCGGCUGu----GGu--UCAUGg -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 8797 | 0.66 | 0.877977 |
Target: 5'- uGG-GUC--GGCCG-CGCCGgucAGUACCg -3' miRNA: 3'- gCCaUAGuuCCGGCuGUGGU---UCAUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 5488 | 0.66 | 0.869847 |
Target: 5'- uGGUcugGUCGAGGUgccauaGCGCCAacucGGUGCCu -3' miRNA: 3'- gCCA---UAGUUCCGgc----UGUGGU----UCAUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 26659 | 0.66 | 0.869847 |
Target: 5'- gGGUAgaaaCGAGGCaaacgaGGCAaacCCAAGUugCc -3' miRNA: 3'- gCCAUa---GUUCCGg-----CUGU---GGUUCAugG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 37829 | 0.66 | 0.86145 |
Target: 5'- ---cAUCGcGGCCGugGCCGAGaACa -3' miRNA: 3'- gccaUAGUuCCGGCugUGGUUCaUGg -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 37255 | 0.66 | 0.86145 |
Target: 5'- uGGUAUCcguGGCCGGCgACCuGGaaaaUAUCg -3' miRNA: 3'- gCCAUAGuu-CCGGCUG-UGGuUC----AUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 32355 | 0.66 | 0.86145 |
Target: 5'- aGGUcgCugcGGUCGcCGCCGAGgccccgGCCg -3' miRNA: 3'- gCCAuaGuu-CCGGCuGUGGUUCa-----UGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 29570 | 0.66 | 0.852793 |
Target: 5'- gGGUAUCGcgucAGGUCGGCcgcgcCCAGGcgcgcgguuUGCCa -3' miRNA: 3'- gCCAUAGU----UCCGGCUGu----GGUUC---------AUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 35116 | 0.66 | 0.852793 |
Target: 5'- uGGUG-CAAGGCCauucGCGCgAAG-GCCg -3' miRNA: 3'- gCCAUaGUUCCGGc---UGUGgUUCaUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 1692 | 0.67 | 0.843885 |
Target: 5'- aGGUAgUCGAGaaauucGCCGugGgCCGGcGUGCCg -3' miRNA: 3'- gCCAU-AGUUC------CGGCugU-GGUU-CAUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 36500 | 0.67 | 0.834737 |
Target: 5'- gGGUcgCGGGGCCGuauccCugCAAugGCCu -3' miRNA: 3'- gCCAuaGUUCCGGCu----GugGUUcaUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 23903 | 0.67 | 0.834737 |
Target: 5'- uGGUGUaacAGGCCGGgGgCGGGcgACCg -3' miRNA: 3'- gCCAUAgu-UCCGGCUgUgGUUCa-UGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 31981 | 0.67 | 0.825358 |
Target: 5'- gCGGUG-C-AGGCUGcGCGCCuGGGUACUa -3' miRNA: 3'- -GCCAUaGuUCCGGC-UGUGG-UUCAUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 32724 | 0.67 | 0.825358 |
Target: 5'- aGGcgAUgGAgGGCUGACGCCAug-ACCg -3' miRNA: 3'- gCCa-UAgUU-CCGGCUGUGGUucaUGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 21245 | 0.67 | 0.805951 |
Target: 5'- uGGgcgCGGuGGCCGGCAUCAAGc-CCg -3' miRNA: 3'- gCCauaGUU-CCGGCUGUGGUUCauGG- -5' |
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26967 | 5' | -51.1 | NC_005809.1 | + | 15518 | 0.67 | 0.805951 |
Target: 5'- gCGGUGaugggC-AGGCCGAUAUgCAcGGUGCCg -3' miRNA: 3'- -GCCAUa----GuUCCGGCUGUG-GU-UCAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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