miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26968 3' -54.8 NC_005809.1 + 19221 0.81 0.079867
Target:  5'- cCGUGUucaUCGGCGGCGAggccgucgaaUUGCGCGGCu -3'
miRNA:   3'- aGCACA---AGCCGUCGUUa---------GACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 42212 0.66 0.630288
Target:  5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3'
miRNA:   3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5'
26968 3' -54.8 NC_005809.1 + 24770 0.66 0.664052
Target:  5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3'
miRNA:   3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5'
26968 3' -54.8 NC_005809.1 + 14804 0.66 0.685309
Target:  5'- uUCGUGUacgugUCcgagccggacgagGGCAGCGAgUUGCGCgagGGCc -3'
miRNA:   3'- -AGCACA-----AG-------------CCGUCGUUaGACGCG---CCG- -5'
26968 3' -54.8 NC_005809.1 + 7535 0.72 0.326827
Target:  5'- cCGUGcgcUCGGCGGCGugcucgAUCUGCGgcgccacCGGCu -3'
miRNA:   3'- aGCACa--AGCCGUCGU------UAGACGC-------GCCG- -5'
26968 3' -54.8 NC_005809.1 + 41761 0.68 0.508555
Target:  5'- ---cGUUCGGCaagGGCugg--GCGCGGCg -3'
miRNA:   3'- agcaCAAGCCG---UCGuuagaCGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 34574 0.68 0.541034
Target:  5'- uUCGUgcGUUCGGCAaaCGA---GCGCGGCg -3'
miRNA:   3'- -AGCA--CAAGCCGUc-GUUagaCGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 5334 0.68 0.563069
Target:  5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3'
miRNA:   3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 26806 0.67 0.585337
Target:  5'- gUCGUGcgucgcaccaUUGGCGGCAA-CgagGUGCGGUa -3'
miRNA:   3'- -AGCACa---------AGCCGUCGUUaGa--CGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 8202 0.66 0.630288
Target:  5'- uUCGUcagcgacaUGGCGGcCAGUUcgUGCGCGGCc -3'
miRNA:   3'- -AGCAcaa-----GCCGUC-GUUAG--ACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 26750 0.67 0.596537
Target:  5'- gCGUGUUCG--AGUc--CUGCGCGGUg -3'
miRNA:   3'- aGCACAAGCcgUCGuuaGACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 10220 0.67 0.585337
Target:  5'- cUCGgcggCGaccGCAGCGAcCUGgGCGGCg -3'
miRNA:   3'- -AGCacaaGC---CGUCGUUaGACgCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 38688 0.78 0.138395
Target:  5'- ---aGUUCGGCGGCGAcggCaGCGCGGCc -3'
miRNA:   3'- agcaCAAGCCGUCGUUa--GaCGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 14772 0.67 0.596537
Target:  5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3'
miRNA:   3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 31353 0.77 0.15066
Target:  5'- gCGUGggCGGgaacgUGGCGGUCaUGCGCGGCa -3'
miRNA:   3'- aGCACaaGCC-----GUCGUUAG-ACGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 12547 0.68 0.563069
Target:  5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3'
miRNA:   3'- agCACAagCCGUcGUUagaCGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 41024 0.67 0.619022
Target:  5'- aUCGagcgGUUCGGCuuuaccaaGGCcgaacugCUGgGCGGCg -3'
miRNA:   3'- -AGCa---CAAGCCG--------UCGuua----GACgCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 40428 0.66 0.652814
Target:  5'- aCGUGUaCGGCGGCGcggUUGaC-CGGCu -3'
miRNA:   3'- aGCACAaGCCGUCGUua-GAC-GcGCCG- -5'
26968 3' -54.8 NC_005809.1 + 12442 0.72 0.311595
Target:  5'- -gGUGcaggcCGGCGGCGuguUCUgGCGCGGCc -3'
miRNA:   3'- agCACaa---GCCGUCGUu--AGA-CGCGCCG- -5'
26968 3' -54.8 NC_005809.1 + 14864 0.68 0.519295
Target:  5'- --aUGacCGGCGGCGAgccgCUGC-CGGCg -3'
miRNA:   3'- agcACaaGCCGUCGUUa---GACGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.