Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26968 | 3' | -54.8 | NC_005809.1 | + | 26806 | 0.67 | 0.585337 |
Target: 5'- gUCGUGcgucgcaccaUUGGCGGCAA-CgagGUGCGGUa -3' miRNA: 3'- -AGCACa---------AGCCGUCGUUaGa--CGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 10220 | 0.67 | 0.585337 |
Target: 5'- cUCGgcggCGaccGCAGCGAcCUGgGCGGCg -3' miRNA: 3'- -AGCacaaGC---CGUCGUUaGACgCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 21573 | 0.67 | 0.574178 |
Target: 5'- cUCGUGccgcucggccacUUCGGUGGCGgucAUCUGCGgauUGGUg -3' miRNA: 3'- -AGCAC------------AAGCCGUCGU---UAGACGC---GCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 4916 | 0.68 | 0.563069 |
Target: 5'- -gGUGgaaacgUCGGCAGCGAUgCccGCGaCGGUc -3' miRNA: 3'- agCACa-----AGCCGUCGUUA-Ga-CGC-GCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 30416 | 0.68 | 0.563069 |
Target: 5'- uUCGc--UCGGCauGGCGAUgaGCGCGGg -3' miRNA: 3'- -AGCacaAGCCG--UCGUUAgaCGCGCCg -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 5334 | 0.68 | 0.563069 |
Target: 5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3' miRNA: 3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 12547 | 0.68 | 0.563069 |
Target: 5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3' miRNA: 3'- agCACAagCCGUcGUUagaCGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 12546 | 0.68 | 0.552018 |
Target: 5'- cUCGgcgUCGGUgaauuucuugccGGCcucgcgCUGCGCGGCg -3' miRNA: 3'- -AGCacaAGCCG------------UCGuua---GACGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 34574 | 0.68 | 0.541034 |
Target: 5'- uUCGUgcGUUCGGCAaaCGA---GCGCGGCg -3' miRNA: 3'- -AGCA--CAAGCCGUc-GUUagaCGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 4480 | 0.68 | 0.519295 |
Target: 5'- cCGUGUucuugUCGGUaucgacGGUAAUCUcacGgGCGGCg -3' miRNA: 3'- aGCACA-----AGCCG------UCGUUAGA---CgCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 14864 | 0.68 | 0.519295 |
Target: 5'- --aUGacCGGCGGCGAgccgCUGC-CGGCg -3' miRNA: 3'- agcACaaGCCGUCGUUa---GACGcGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 41761 | 0.68 | 0.508555 |
Target: 5'- ---cGUUCGGCaagGGCugg--GCGCGGCg -3' miRNA: 3'- agcaCAAGCCG---UCGuuagaCGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 8139 | 0.69 | 0.497909 |
Target: 5'- gUUGUGggCGuGCGGguGUCgGCGCuGCg -3' miRNA: 3'- -AGCACaaGC-CGUCguUAGaCGCGcCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 18653 | 0.69 | 0.497909 |
Target: 5'- uUCGUGaUCGGgGGCGGUCgcccGCcccCGGCc -3' miRNA: 3'- -AGCACaAGCCgUCGUUAGa---CGc--GCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 26129 | 0.69 | 0.476927 |
Target: 5'- aUGUGUUCGucGCGGCAGaUUUGgcgcaGCGGCu -3' miRNA: 3'- aGCACAAGC--CGUCGUU-AGACg----CGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 21152 | 0.69 | 0.470718 |
Target: 5'- cCGUGUccgCGcccugguucaacagcGCGGCcugCUGCGCGGCc -3' miRNA: 3'- aGCACAa--GC---------------CGUCGuuaGACGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 18811 | 0.69 | 0.467628 |
Target: 5'- -gGUGaUCuGGCGGCGcaggaagcugcgaauUUUGCGCGGCa -3' miRNA: 3'- agCACaAG-CCGUCGUu--------------AGACGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 34188 | 0.69 | 0.466601 |
Target: 5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3' miRNA: 3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 28664 | 0.69 | 0.466601 |
Target: 5'- aUCG-GUgcCGGCGGCc-UCgccaGCGCGGCg -3' miRNA: 3'- -AGCaCAa-GCCGUCGuuAGa---CGCGCCG- -5' |
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26968 | 3' | -54.8 | NC_005809.1 | + | 422 | 0.7 | 0.450324 |
Target: 5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3' miRNA: 3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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