miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26968 5' -62.1 NC_005809.1 + 33902 1.09 0.000117
Target:  5'- uGGGCGGCGCAGCAGCCGCUGCACACAg -3'
miRNA:   3'- -CCCGCCGCGUCGUCGGCGACGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 40435 0.82 0.017002
Target:  5'- cGGCGGCGCGGUugaccGGCUGCUGCACGa- -3'
miRNA:   3'- cCCGCCGCGUCG-----UCGGCGACGUGUgu -5'
26968 5' -62.1 NC_005809.1 + 18825 0.78 0.035209
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26968 5' -62.1 NC_005809.1 + 5632 0.76 0.05746
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 16822 0.75 0.062605
Target:  5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3'
miRNA:   3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 15751 0.74 0.074263
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26968 5' -62.1 NC_005809.1 + 14760 0.74 0.075752
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 25770 0.74 0.076399
Target:  5'- uGGGCGGCgGCAaCgauGGCCGCgaUGCGCGCGg -3'
miRNA:   3'- -CCCGCCG-CGUcG---UCGGCG--ACGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 14869 0.74 0.080848
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 35024 0.73 0.083164
Target:  5'- cGGUGGCGCcgcagaucgAGCAcGCCGCcgaGCGCACGg -3'
miRNA:   3'- cCCGCCGCG---------UCGU-CGGCGa--CGUGUGU- -5'
26968 5' -62.1 NC_005809.1 + 9210 0.73 0.090499
Target:  5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3'
miRNA:   3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5'
26968 5' -62.1 NC_005809.1 + 28141 0.73 0.093077
Target:  5'- cGGGCGGCaGCAGCuuGCCGgUGguCAg- -3'
miRNA:   3'- -CCCGCCG-CGUCGu-CGGCgACguGUgu -5'
26968 5' -62.1 NC_005809.1 + 41432 0.73 0.093077
Target:  5'- cGGCGaGCGCAaaCGGCCGCUGCuCAUg -3'
miRNA:   3'- cCCGC-CGCGUc-GUCGGCGACGuGUGu -5'
26968 5' -62.1 NC_005809.1 + 25620 0.73 0.095725
Target:  5'- cGGCGGCGCGGUcGCCaGCaGCGCGu- -3'
miRNA:   3'- cCCGCCGCGUCGuCGG-CGaCGUGUgu -5'
26968 5' -62.1 NC_005809.1 + 7894 0.72 0.100391
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5'
26968 5' -62.1 NC_005809.1 + 18818 0.72 0.101237
Target:  5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3'
miRNA:   3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5'
26968 5' -62.1 NC_005809.1 + 31431 0.72 0.107046
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26968 5' -62.1 NC_005809.1 + 18436 0.71 0.11635
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26968 5' -62.1 NC_005809.1 + 37419 0.71 0.122966
Target:  5'- aGGGCGuGaGCAGCgacGGCCGCcUGCGCgGCAc -3'
miRNA:   3'- -CCCGC-CgCGUCG---UCGGCG-ACGUG-UGU- -5'
26968 5' -62.1 NC_005809.1 + 27839 0.71 0.126404
Target:  5'- cGGUGGCGcCGGCcgcGCCGCUGCuCAa- -3'
miRNA:   3'- cCCGCCGC-GUCGu--CGGCGACGuGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.