miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26969 3' -63 NC_005809.1 + 14978 0.66 0.25635
Target:  5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3'
miRNA:   3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5'
26969 3' -63 NC_005809.1 + 32366 0.66 0.249978
Target:  5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3'
miRNA:   3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5'
26969 3' -63 NC_005809.1 + 21834 0.66 0.249978
Target:  5'- gCGCCUcuacgGCGCCAgcagcauguCGGCCUgaugggguGCCCGUg- -3'
miRNA:   3'- aGCGGA-----UGCGGU---------GCCGGG--------UGGGCGua -5'
26969 3' -63 NC_005809.1 + 12995 0.66 0.243737
Target:  5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3'
miRNA:   3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5'
26969 3' -63 NC_005809.1 + 26981 0.66 0.243737
Target:  5'- -gGCCgAUGgCGCGGUgCAUCCGCAg -3'
miRNA:   3'- agCGGaUGCgGUGCCGgGUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 681 0.67 0.237626
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26969 3' -63 NC_005809.1 + 16269 0.67 0.237626
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26969 3' -63 NC_005809.1 + 39508 0.67 0.237022
Target:  5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3'
miRNA:   3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 41726 0.67 0.231644
Target:  5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3'
miRNA:   3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5'
26969 3' -63 NC_005809.1 + 40119 0.67 0.229875
Target:  5'- aCGCCUugugcaacaucgugGCGCCGaucuucgaGGCCgGCCUGCu- -3'
miRNA:   3'- aGCGGA--------------UGCGGUg-------CCGGgUGGGCGua -5'
26969 3' -63 NC_005809.1 + 20004 0.67 0.22579
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 40707 0.67 0.22579
Target:  5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3'
miRNA:   3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5'
26969 3' -63 NC_005809.1 + 5351 0.67 0.214457
Target:  5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3'
miRNA:   3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5'
26969 3' -63 NC_005809.1 + 40565 0.67 0.208976
Target:  5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3'
miRNA:   3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5'
26969 3' -63 NC_005809.1 + 20188 0.67 0.208435
Target:  5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3'
miRNA:   3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5'
26969 3' -63 NC_005809.1 + 11515 0.68 0.198376
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5'
26969 3' -63 NC_005809.1 + 35953 0.68 0.188247
Target:  5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3'
miRNA:   3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5'
26969 3' -63 NC_005809.1 + 24175 0.68 0.183356
Target:  5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3'
miRNA:   3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5'
26969 3' -63 NC_005809.1 + 23878 0.68 0.178577
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 14484 0.69 0.172988
Target:  5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3'
miRNA:   3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.