Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26970 | 3' | -60.5 | NC_005809.1 | + | 3460 | 0.66 | 0.432856 |
Target: 5'- aCGCcGCGCgCCCCGa----UGUUCGCg -3' miRNA: 3'- gGCGcUGCG-GGGGCgcuugACGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 9866 | 0.66 | 0.432856 |
Target: 5'- -aGCGugGCaCCgGCGcGCUGCUucucggccaggCGCg -3' miRNA: 3'- ggCGCugCGgGGgCGCuUGACGA-----------GCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 2905 | 0.66 | 0.432856 |
Target: 5'- aCGCcGCGCgCCCCGa----UGUUCGCg -3' miRNA: 3'- gGCGcUGCG-GGGGCgcuugACGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 18548 | 0.66 | 0.432856 |
Target: 5'- gUCGCGuCGCCUUCGCuGAAUUGgCcgaCGCg -3' miRNA: 3'- -GGCGCuGCGGGGGCG-CUUGAC-Ga--GCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 20045 | 0.66 | 0.432856 |
Target: 5'- aCGCG-CGCgCUgCGCG---UGCUCGCu -3' miRNA: 3'- gGCGCuGCG-GGgGCGCuugACGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 18950 | 0.66 | 0.432856 |
Target: 5'- aCCGCGAaaccaaCGCacguuuuaCCGgGGGCUGCaCGCa -3' miRNA: 3'- -GGCGCU------GCGgg------GGCgCUUGACGaGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 32663 | 0.66 | 0.430064 |
Target: 5'- gCCGCGAagcUGCCCgaCGUGAagcccgagcaguucGCcgacgUGCUCGCc -3' miRNA: 3'- -GGCGCU---GCGGGg-GCGCU--------------UG-----ACGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 30421 | 0.66 | 0.42359 |
Target: 5'- aCCcCGACGCCUaCGCGGAa-GCgcagCGCg -3' miRNA: 3'- -GGcGCUGCGGGgGCGCUUgaCGa---GCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 11926 | 0.66 | 0.42359 |
Target: 5'- cCCGaCGaauuggucuGCGCCCUcauuCGCGccGGCUGgUCGCa -3' miRNA: 3'- -GGC-GC---------UGCGGGG----GCGC--UUGACgAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 1657 | 0.66 | 0.42359 |
Target: 5'- uCUGCG-CGUCCUguuugCGCGugauGCUGC-CGCg -3' miRNA: 3'- -GGCGCuGCGGGG-----GCGCu---UGACGaGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 42155 | 0.66 | 0.42359 |
Target: 5'- aCCaaCGugGCCCgCGaCGuGCUGCUCa- -3' miRNA: 3'- -GGc-GCugCGGGgGC-GCuUGACGAGcg -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 35198 | 0.66 | 0.42359 |
Target: 5'- gCCGCGGUGCCCgCCGCuGGACgaacgaCGCc -3' miRNA: 3'- -GGCGCUGCGGG-GGCG-CUUGacga--GCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 7896 | 0.66 | 0.42267 |
Target: 5'- -gGCGGCGCgUgcguagaUCGCcAGCUGCUCGUu -3' miRNA: 3'- ggCGCUGCGgG-------GGCGcUUGACGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 8160 | 0.66 | 0.419916 |
Target: 5'- gCGCuGCGUCCCUGCGcgugcgcccggauGCUGCcggcgauuucaUCGCg -3' miRNA: 3'- gGCGcUGCGGGGGCGCu------------UGACG-----------AGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 35363 | 0.66 | 0.414443 |
Target: 5'- gCGCaGAUGCUgCCGUGGACa--UCGCg -3' miRNA: 3'- gGCG-CUGCGGgGGCGCUUGacgAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 20280 | 0.66 | 0.414443 |
Target: 5'- gCCGuCGuuGCCCgCaccaguaGCGggUUGCUCGg -3' miRNA: 3'- -GGC-GCugCGGG-Gg------CGCuuGACGAGCg -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 2205 | 0.66 | 0.414443 |
Target: 5'- aUGcCGACGCCCUCGuCGggUaGCaccacgCGCa -3' miRNA: 3'- gGC-GCUGCGGGGGC-GCuuGaCGa-----GCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 4207 | 0.66 | 0.414443 |
Target: 5'- gCCGCGA-GCaCgUCGCGGcuuGCgGCUUGCg -3' miRNA: 3'- -GGCGCUgCG-GgGGCGCU---UGaCGAGCG- -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 31920 | 0.66 | 0.405419 |
Target: 5'- cCUGCGGCGUUUCga-GGGCUGCUCGa -3' miRNA: 3'- -GGCGCUGCGGGGgcgCUUGACGAGCg -5' |
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26970 | 3' | -60.5 | NC_005809.1 | + | 28870 | 0.66 | 0.405419 |
Target: 5'- gCCGCGccACGUCCUCGC----UGCUgGCg -3' miRNA: 3'- -GGCGC--UGCGGGGGCGcuugACGAgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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