Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26971 | 3' | -63.1 | NC_005809.1 | + | 38186 | 0.66 | 0.294207 |
Target: 5'- aGgCCCGGC-GCGacGGCgCCUGGcuGCg -3' miRNA: 3'- -CgGGGCCGuCGCa-CCG-GGACCuuCGg -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 37947 | 0.66 | 0.287149 |
Target: 5'- aCCCugCGGCAGCGcgGGCCaacauUGGccuGGCUg -3' miRNA: 3'- cGGG--GCCGUCGCa-CCGGg----ACCu--UCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 14352 | 0.66 | 0.287149 |
Target: 5'- -aCCCGcGCguggucgucGGCGUGGCcgaCCUGGAcaaggcGCCg -3' miRNA: 3'- cgGGGC-CG---------UCGCACCG---GGACCUu-----CGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 13157 | 0.66 | 0.280225 |
Target: 5'- cGCCUcgauguCGGcCAGUGUcGGCCgcgCUGGgcGCCc -3' miRNA: 3'- -CGGG------GCC-GUCGCA-CCGG---GACCuuCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 42256 | 0.66 | 0.266777 |
Target: 5'- cCCCCGGUacGGCac-GCCCUGGAcggaagAGCg -3' miRNA: 3'- cGGGGCCG--UCGcacCGGGACCU------UCGg -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 7627 | 0.66 | 0.266777 |
Target: 5'- aGCgCCGGaCA-CGUGGCCUUGGccuuGCa -3' miRNA: 3'- -CGgGGCC-GUcGCACCGGGACCuu--CGg -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 10217 | 0.66 | 0.26025 |
Target: 5'- gGCCUCGGCGGCGaccGCagcgaCCUGGGcGGCg -3' miRNA: 3'- -CGGGGCCGUCGCac-CG-----GGACCU-UCGg -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 27706 | 0.67 | 0.256398 |
Target: 5'- cGCgCCGGCAGCGgcucgccgccggucaUGGaCUUGauGAGGCCc -3' miRNA: 3'- -CGgGGCCGUCGC---------------ACCgGGAC--CUUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 14815 | 0.67 | 0.253223 |
Target: 5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3' miRNA: 3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 28777 | 0.67 | 0.247589 |
Target: 5'- cGCgCaCGGCGucGCGcuuGCCCUGGuuGCCg -3' miRNA: 3'- -CGgG-GCCGU--CGCac-CGGGACCuuCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 25538 | 0.67 | 0.247589 |
Target: 5'- cGCCgCCGGCAGCGcc-CCCgu--AGCCg -3' miRNA: 3'- -CGG-GGCCGUCGCaccGGGaccuUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 6339 | 0.67 | 0.241452 |
Target: 5'- cGCCCCaGCcaaAGCGcccGGCCCga-AGGCCg -3' miRNA: 3'- -CGGGGcCG---UCGCa--CCGGGaccUUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 22744 | 0.67 | 0.241452 |
Target: 5'- uGCCCCaGCAGaGUGgacuuGCCCaGGGugagGGCCg -3' miRNA: 3'- -CGGGGcCGUCgCAC-----CGGGaCCU----UCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 11514 | 0.67 | 0.235442 |
Target: 5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3' miRNA: 3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 4044 | 0.67 | 0.235442 |
Target: 5'- gGCCgCGGCgAGCGgcaggccagcGGCCCaggggggauUGGuAGCCa -3' miRNA: 3'- -CGGgGCCG-UCGCa---------CCGGG---------ACCuUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 8861 | 0.67 | 0.235442 |
Target: 5'- aGCCCaggacggugCGGUAGCGUucGGCCUUGGc-GUCc -3' miRNA: 3'- -CGGG---------GCCGUCGCA--CCGGGACCuuCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 35400 | 0.67 | 0.223799 |
Target: 5'- cGCCCCcGaauccgacaAGCGcccGGCCCUGGucauccAGGCCg -3' miRNA: 3'- -CGGGGcCg--------UCGCa--CCGGGACC------UUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 20647 | 0.67 | 0.220403 |
Target: 5'- gGCCuuGGuCGGCgGUGacaucuacggcaacaGCCCcgcaaUGGAAGCCu -3' miRNA: 3'- -CGGggCC-GUCG-CAC---------------CGGG-----ACCUUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 41891 | 0.67 | 0.218163 |
Target: 5'- cGgCCCGGcCGGCGccgccguaGGCgCCUGGuGGCUa -3' miRNA: 3'- -CgGGGCC-GUCGCa-------CCG-GGACCuUCGG- -5' |
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26971 | 3' | -63.1 | NC_005809.1 | + | 21161 | 0.67 | 0.218163 |
Target: 5'- cGCCCUGGUucaacAGCGcGGCCUgcUGcGcGGCCu -3' miRNA: 3'- -CGGGGCCG-----UCGCaCCGGG--AC-CuUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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